Name: Muricauda iocasae L2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159871

Type strain:

Species: Muricauda iocasae

Strain Designation: L2

Culture col. no.: CCTCC AB 2017193, KCTC 62196

Strain history: <- Liu Shiqi, Institute of Oceanology, Chinese Academy of Sciences

NCBI tax ID(s): 2055905 (species)

Special Collections

Section

Muricauda iocasae L2 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from deep sea sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda iocasae
	Full Scientific Name (LPSN)	Muricauda iocasae Liu et al. 2018

Synonym

Allomuricauda iocasae

Information on morphological and physiological properties Morphology

[Ref.: #66612]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #66612]	Cell length	1.3-2.5 µm

[Ref.: #66612]	Cell width	0.2-0.4 µm

[Ref.: #66612]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #66612]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #66612]	Colony size	0.8-1 mm
[Ref.: #66612]	Colony color	yellow
[Ref.: #66612]	Colony shape	circular
[Ref.: #66612]	Cultivation medium used	Marine agar (MA)

[Ref.: #66612]	Pigment production	yes
[Ref.: #66612]	Pigment name	carotenoid pigment
[Ref.: #66612]	Pigment production	no
[Ref.: #66612]	Pigment name	flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66612]

Culture medium

Marine agar (MA)

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Culture medium growth

		Temperature
[Ref.: #66612]	optimum	37 °C
[Ref.: #66612]	growth	22-40 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #66612]			optimum	7
[Ref.: #66612]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66612]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66612]		NaCl		growth	0-8	%(w/v)
[Ref.: #66612]		NaCl		optimum	2	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66612]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #66612]	4-nitrophenyl beta-D-glucopyranoside ChEBI	+	hydrolysis
[Ref.: #66612]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #66612]	adipate ChEBI	-	carbon source
[Ref.: #66612]	adipate ChEBI	-	energy source
[Ref.: #66612]	amygdalin ChEBI	+	builds acid from
[Ref.: #66612]	arabinose ChEBI	-	carbon source
[Ref.: #66612]	arabinose ChEBI	-	energy source
[Ref.: #66612]	arbutin ChEBI	+	builds acid from
[Ref.: #66612]	casein	-	hydrolysis
[Ref.: #66612]	cellobiose ChEBI	+	builds acid from
[Ref.: #66612]	cellobiose ChEBI	+	carbon source
[Ref.: #66612]	cellobiose ChEBI	+	energy source
[Ref.: #66612]	D-arabitol ChEBI	+	builds acid from
[Ref.: #66612]	D-fructose ChEBI	-	builds acid from
[Ref.: #66612]	D-fructose ChEBI	+	carbon source
[Ref.: #66612]	D-fructose ChEBI	+	energy source
[Ref.: #66612]	D-lyxose ChEBI	-	builds acid from
[Ref.: #66612]	D-tagatose ChEBI	+	builds acid from
[Ref.: #66612]	D-xylose ChEBI	+	builds acid from
[Ref.: #66612]	decanoate ChEBI	-	carbon source
[Ref.: #66612]	decanoate ChEBI	-	energy source
[Ref.: #66612]	erythritol ChEBI	-	builds acid from
[Ref.: #66612]	esculin ChEBI	+	builds acid from
[Ref.: #66612]	esculin ChEBI	+	hydrolysis
[Ref.: #66612]	galactitol ChEBI	+	builds acid from
[Ref.: #66612]	galactose ChEBI	-	builds acid from
[Ref.: #66612]	gelatin ChEBI	-	carbon source
[Ref.: #66612]	gelatin ChEBI	-	energy source
[Ref.: #66612]	gentiobiose ChEBI	+	builds acid from
[Ref.: #66612]	glucose ChEBI	+	builds acid from
[Ref.: #66612]	glucose ChEBI	+	carbon source
[Ref.: #66612]	glucose ChEBI	+	energy source
[Ref.: #66612]	glycerol ChEBI	+	builds acid from
[Ref.: #66612]	glycine ChEBI	-	carbon source
[Ref.: #66612]	glycine ChEBI	-	energy source
[Ref.: #66612]	glycogen ChEBI	+	builds acid from
[Ref.: #66612]	L-arabitol ChEBI	+	builds acid from
[Ref.: #66612]	lactose ChEBI	+	builds acid from
[Ref.: #66612]	lactose ChEBI	-	carbon source
[Ref.: #66612]	lactose ChEBI	-	energy source
[Ref.: #66612]	malate ChEBI	+	carbon source
[Ref.: #66612]	malate ChEBI	+	energy source
[Ref.: #66612]	maltose ChEBI	+	builds acid from
[Ref.: #66612]	maltose ChEBI	+	carbon source
[Ref.: #66612]	maltose ChEBI	+	energy source
[Ref.: #66612]	mannitol ChEBI	+	builds acid from
[Ref.: #66612]	mannitol ChEBI	-	carbon source
[Ref.: #66612]	mannitol ChEBI	-	energy source
[Ref.: #66612]	mannose ChEBI	+	builds acid from
[Ref.: #66612]	melezitose ChEBI	-	builds acid from
[Ref.: #66612]	melibiose ChEBI	+	builds acid from
[Ref.: #66612]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #66612]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #66612]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #66612]	myo-inositol ChEBI	+	builds acid from
[Ref.: #66612]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #66612]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66612]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #66612]	nitrate ChEBI	+	reduction
[Ref.: #66612]	phenylacetate ChEBI	-	carbon source
[Ref.: #66612]	phenylacetate ChEBI	-	energy source
[Ref.: #66612]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #66612]	potassium gluconate ChEBI	+	carbon source
[Ref.: #66612]	potassium gluconate ChEBI	+	energy source
[Ref.: #66612]	raffinose ChEBI	+	builds acid from
[Ref.: #66612]	rhamnose ChEBI	-	builds acid from
[Ref.: #66612]	ribitol ChEBI	-	builds acid from
[Ref.: #66612]	ribitol ChEBI	+	builds acid from
[Ref.: #66612]	ribitol ChEBI	+	carbon source
[Ref.: #66612]	ribitol ChEBI	+	energy source
[Ref.: #66612]	salicin ChEBI	+	builds acid from
[Ref.: #66612]	sodium alginate ChEBI	-	carbon source
[Ref.: #66612]	sodium alginate ChEBI	-	energy source
[Ref.: #66612]	sodium citrate ChEBI	+	carbon source
[Ref.: #66612]	sodium citrate ChEBI	+	energy source
[Ref.: #66612]	sodium succinate ChEBI	-	carbon source
[Ref.: #66612]	sodium succinate ChEBI	-	energy source
[Ref.: #66612]	sorbitol ChEBI	-	builds acid from
[Ref.: #66612]	sorbitol ChEBI	-	carbon source
[Ref.: #66612]	sorbitol ChEBI	-	energy source
[Ref.: #66612]	starch ChEBI	+	builds acid from
[Ref.: #66612]	starch ChEBI	-	hydrolysis
[Ref.: #66612]	sucrose ChEBI	+	builds acid from
[Ref.: #66612]	sucrose ChEBI	+	carbon source
[Ref.: #66612]	sucrose ChEBI	+	energy source
[Ref.: #66612]	synanthrin	-	builds acid from
[Ref.: #66612]	tryptophan ChEBI	-	energy source
[Ref.: #66612]	turanose ChEBI	+	builds acid from
[Ref.: #66612]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66612]	tween 40 ChEBI	-	hydrolysis
[Ref.: #66612]	tween 60 ChEBI	-	hydrolysis
[Ref.: #66612]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66612]	Amikacin ChEBI				yes	30	µg (disc)
[Ref.: #66612]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #66612]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #66612]	cefazolin ChEBI				yes	30	µg (disc)
[Ref.: #66612]	cefoperazone ChEBI				yes	75	µg (disc)
[Ref.: #66612]	ceftazidime ChEBI				yes	30	µg (disc)
[Ref.: #66612]	ceftriaxone ChEBI				yes	30	µg (disc)
[Ref.: #66612]	cefuroxime ChEBI				yes	30	µg (disc)
[Ref.: #66612]	cephalexin ChEBI				yes	30	µg (disc)
[Ref.: #66612]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #66612]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #66612]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #66612]	doxycycline ChEBI				yes	30	µg (disc)
[Ref.: #66612]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #66612]	furazolidone ChEBI	yes	300	µg (disc)
[Ref.: #66612]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #66612]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #66612]	midecamycin ChEBI	yes	30	µg (disc)
[Ref.: #66612]	minocycline ChEBI	yes	30	µg (disc)
[Ref.: #66612]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #66612]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #66612]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #66612]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #66612]	penicillin ChEBI				yes	10	µg (disc)
[Ref.: #66612]	piperacillin ChEBI				yes	100	µg (disc)
[Ref.: #66612]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #66612]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #66612]	Trimethoprim + Sulfamethoxazole ChEBI				yes	1.25	µg (disc)
[Ref.: #66612]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66612]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #66612]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #66612]	acid phosphatase	+	3.1.3.2
[Ref.: #66612]	alkaline phosphatase	-	3.1.3.1
[Ref.: #66612]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66612]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #66612]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66612]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66612]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #66612]	beta-glucosidase	+	3.2.1.21
[Ref.: #66612]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66612]	catalase	+	1.11.1.6
[Ref.: #66612]	chymotrypsin	-	3.4.4.5
[Ref.: #66612]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #66612]	cytochrome oxidase	-	1.9.3.1
[Ref.: #66612]	esterase (C 4)	+
[Ref.: #66612]	esterase Lipase (C 8)	+/-
[Ref.: #66612]	gelatinase	+
[Ref.: #66612]	leucine arylamidase	+	3.4.11.1
[Ref.: #66612]	lipase (C 14)	-
[Ref.: #66612]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66612]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66612]	trypsin	+/-	3.4.21.4
[Ref.: #66612]	tryptophan deaminase	-	4.1.99.1
[Ref.: #66612]	urease	-	3.5.1.5
[Ref.: #66612]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66612]	Sample type/isolated from	deep sea sediment
[Ref.: #66612]	Sampling date	2017-04
[Ref.: #66612]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #66612]	Country	Pacific Ocean
[Ref.: #66612]	Geographic location	19.9700°/117.3900°
[Ref.: #66612]	Enrichment culture	MA
[Ref.: #66612]	Enrichment culture duration	5 days
[Ref.: #66612]	Enrichment culture temperature	28 ̊C
[Ref.: #66612]	Isolation/enrichment procedure	1 g sediment sample was suspended with 3 ml sterile sea water and 100 µl suspension was spread on marine agar

[Ref.: #67771]	Sample type/isolated from	From deep sea sediments
[Ref.: #67771]	Geographic location (country and/or sea, region)	South China Sea(117.39Â°E
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	19.9700°/117.3900°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66612]	Flagellimonas iocasae strain L2 16S ribosomal RNA gene, partial sequence	MG563767	1423	GenBank ENA	2055905 tax ID

[Ref.: #66612]	GC-content	51.30 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	44.7-55.9 mol%

Availability in culture collections External links

[Ref.: #66612]

Culture collection no.

CCTCC AB 2017193, KCTC 62196

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.	Liu SQ, Sun QL, Sun YY, Yu C, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002870	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66612

Shi-qi Liu, Qing-lei Sun, Yuan-yuan Sun, Chao Yu and Li Sun: Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea. IJSEM 68: 2538 - 2544 2018 ( DOI 10.1099/ijsem.0.002870 , PubMed 29932387 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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