Strain identifier

BacDive ID: 159871

Type strain: Yes

Species: Muricauda iocasae

Strain Designation: L2

Strain history: <- Liu Shiqi, Institute of Oceanology, Chinese Academy of Sciences

NCBI tax ID(s): 2055905 (species)

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General

@ref: 66612

BacDive-ID: 159871

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Muricauda iocasae L2 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from deep sea sediment.

NCBI tax id

  • NCBI tax id: 2055905
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Liu Shiqi, Institute of Oceanology, Chinese Academy of Sciences

doi: 10.13145/bacdive159871.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda iocasae
  • full scientific name: Muricauda iocasae Liu et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda iocasae

@ref: 66612

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda iocasae

strain designation: L2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
66612negative1.3-2.5 µm0.2-0.4 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 66612
  • colony size: 0.8-1 mm
  • colony color: yellow
  • colony shape: circular
  • medium used: Marine agar (MA)

pigmentation

@refproductionname
66612yescarotenoid pigment
66612noflexirubin-type

Culture and growth conditions

culture medium

  • @ref: 66612
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66612positiveoptimum37mesophilic
66612positivegrowth22-40
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
66612positiveoptimum7
66612positivegrowth6-10alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66612aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
66612NaClpositivegrowth0-8 %(w/v)
66612NaClpositiveoptimum2 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
666126731melezitose-builds acid from
6661215824D-fructose-builds acid from
6661215963ribitol-builds acid from
66612168082-dehydro-D-gluconate-builds acid from
6661217113erythritol-builds acid from
6661226546rhamnose-builds acid from
6661228260galactose-builds acid from
6661230911sorbitol-builds acid from
6661232032potassium gluconate-builds acid from
6661243943methyl alpha-D-mannoside-builds acid from
66612581435-dehydro-D-gluconate-builds acid from
6661259640N-acetylglucosamine-builds acid from
6661262318D-lyxose-builds acid from
6661274863methyl beta-D-xylopyranoside-builds acid from
66612320061methyl alpha-D-glucopyranoside-builds acid from
66612synanthrin-builds acid from
666124853esculin+builds acid from
6661215963ribitol+builds acid from
6661216443D-tagatose+builds acid from
6661216634raffinose+builds acid from
6661216813galactitol+builds acid from
6661217057cellobiose+builds acid from
6661217234glucose+builds acid from
6661217268myo-inositol+builds acid from
6661217306maltose+builds acid from
6661217716lactose+builds acid from
6661217754glycerol+builds acid from
6661217814salicin+builds acid from
6661217992sucrose+builds acid from
6661218305arbutin+builds acid from
6661218333D-arabitol+builds acid from
6661218403L-arabitol+builds acid from
6661227613amygdalin+builds acid from
6661228017starch+builds acid from
6661228053melibiose+builds acid from
6661228066gentiobiose+builds acid from
6661228087glycogen+builds acid from
6661229864mannitol+builds acid from
6661232528turanose+builds acid from
6661237684mannose+builds acid from
6661265327D-xylose+builds acid from
666125291gelatin-carbon source
6661215428glycine-carbon source
6661217128adipate-carbon source
6661217716lactose-carbon source
6661218401phenylacetate-carbon source
6661222599arabinose-carbon source
6661227689decanoate-carbon source
6661229864mannitol-carbon source
6661230911sorbitol-carbon source
6661253311sodium alginate-carbon source
6661263675sodium succinate-carbon source
6661215824D-fructose+carbon source
6661215963ribitol+carbon source
6661217057cellobiose+carbon source
6661217234glucose+carbon source
6661217306maltose+carbon source
6661217992sucrose+carbon source
6661225115malate+carbon source
6661232032potassium gluconate+carbon source
6661253258sodium citrate+carbon source
6661259640N-acetylglucosamine+carbon source
666125291gelatin-energy source
6661215428glycine-energy source
6661217128adipate-energy source
6661217716lactose-energy source
6661218401phenylacetate-energy source
6661222599arabinose-energy source
6661227689decanoate-energy source
6661227897tryptophan-energy source
6661229864mannitol-energy source
6661230911sorbitol-energy source
6661253311sodium alginate-energy source
6661263675sodium succinate-energy source
6661215824D-fructose+energy source
6661215963ribitol+energy source
6661217057cellobiose+energy source
6661217234glucose+energy source
6661217306maltose+energy source
6661217992sucrose+energy source
6661225115malate+energy source
6661232032potassium gluconate+energy source
6661253258sodium citrate+energy source
6661259640N-acetylglucosamine+energy source
6661228017starch-hydrolysis
6661253423tween 40-hydrolysis
6661253425tween 60-hydrolysis
6661253426tween 80-hydrolysis
66612casein-hydrolysis
666124853esculin+hydrolysis
6661253424tween 20+hydrolysis
66612902594-nitrophenyl beta-D-glucopyranoside+hydrolysis
6661217632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6661217698chloramphenicolyesyes30 µg (disc)
666125195furazolidoneyesyes300 µg (disc)
66612100241ciprofloxacinyesyes5 µg (disc)
666127731ofloxacinyesyes5 µg (disc)
6661231845midecamycinyesyes30 µg (disc)
6661250694minocyclineyesyes30 µg (disc)
666123745clindamycinyesyes2 µg (disc)
6661217334penicillinyesyes10 µg (disc)
6661245924Trimethoprim + Sulfamethoxazoleyesyes1.25 µg (disc)
666128309polymyxin byesyes300 Unit (disc)
6661228001vancomycinyesyes30 µg (disc)
66612100246norfloxacinyesyes10 µg (disc)
6661248923erythromycinyesyes15 µg (disc)
6661250845doxycyclineyesyes30 µg (disc)
6661227902tetracyclineyesyes30 µg (disc)
666127507neomycinyesyes30 µg (disc)
666126104kanamycinyesyes30 µg (disc)
6661217833gentamicinyesyes10 µg (disc)
666122637Amikacinyesyes30 µg (disc)
666123493cefoperazoneyesyes75 µg (disc)
6661229007ceftriaxoneyesyes30 µg (disc)
666123508ceftazidimeyesyes30 µg (disc)
666123515cefuroximeyesyes30 µg (disc)
66612474053cefazolinyesyes30 µg (disc)
666123534cephalexinyesyes30 µg (disc)
666128232piperacillinyesyes100 µg (disc)
666123393carbenicillinyesyes100 µg (disc)
6661228971ampicillinyesyes10 µg (disc)
666127809oxacillinyesyes1 µg (disc)

metabolite production

  • @ref: 66612
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 66612
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
66612alkaline phosphatase-3.1.3.1
66612alpha-fucosidase-3.2.1.51
66612beta-glucuronidase-3.2.1.31
66612chymotrypsin-3.4.4.5
66612cytochrome oxidase-1.9.3.1
66612lipase (C 14)-
66612tryptophan deaminase-4.1.99.1
66612urease-3.5.1.5
66612acid phosphatase+3.1.3.2
66612alpha-glucosidase+3.2.1.20
66612alpha-mannosidase+3.2.1.24
66612beta-glucosidase+3.2.1.21
66612catalase+1.11.1.6
66612esterase (C 4)+
66612gelatinase+
66612leucine arylamidase+3.4.11.1
66612N-acetyl-beta-glucosaminidase+3.2.1.52
66612naphthol-AS-BI-phosphohydrolase+
66612valine arylamidase+
66612alpha-galactosidase+/-3.2.1.22
66612beta-galactosidase+/-3.2.1.23
66612cystine arylamidase+/-3.4.11.3
66612esterase Lipase (C 8)+/-
66612trypsin+/-3.4.21.4

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountrylatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedureorigin.countrycontinent
66612deep sea sediment2017-04South China SeaPacific Ocean19.97117.39MA5 days281 g sediment sample was suspended with 3 ml sterile sea water and 100 µl suspension was spread on marine agar
67771From deep sea sedimentsSouth China Sea(117.39°EChina19.97117.39CHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 66612
  • description: Muricauda sp. L2 16S ribosomal RNA gene, partial sequence
  • accession: MG563767
  • length: 1423
  • database: ena
  • NCBI tax ID: 2055905

GC content

@refGC-contentmethod
6661251.30high performance liquid chromatography (HPLC)
6777144.7-55.9

External links

@ref: 66612

culture collection no.: CCTCC AB 2017193, KCTC 62196

literature

  • topic: Phylogeny
  • Pubmed-ID: 29932387
  • title: Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.
  • authors: Liu SQ, Sun QL, Sun YY, Yu C, Sun L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002870
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66612Shi-qi Liu, Qing-lei Sun, Yuan-yuan Sun, Chao Yu and Li SunMuricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea10.1099/ijsem.0.002870IJSEM 68: 2538-2544 201829932387
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc