Name: Deinococcus koreensis SJW1-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159872

Type strain:

Species: Deinococcus koreensis

Strain Designation: SJW1-2

Culture col. no.: KACC 19332, NBRC 112908

NCBI tax ID(s): 2054903 (species)

Section

Deinococcus koreensis SJW1-2 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from river surface water.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus koreensis**
	Full Scientific Name (LPSN)	Deinococcus koreensis Baek et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66614]	Gram stain	negative

[Ref.: #66614]	Cell length	2.5-2.8 µm

[Ref.: #66614]	Cell width	1.2-1.5 µm

[Ref.: #66614]	Cell shape	rod-shaped

[Ref.: #66614]	Motility	no

[Ref.: #66614]	Colony size	1 mm
[Ref.: #66614]	Colony color	shiny
[Ref.: #66614]	Colony shape	circular
[Ref.: #66614]	Incubation period	5 days
[Ref.: #66614]	Cultivation medium used	R2A medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66614]			optimum	25 °C
[Ref.: #66614]			growth	10-37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #66614]			optimum	7
[Ref.: #66614]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66614]		NaCl		growth	0.0-2.0	%
[Ref.: #66614]		NaCl		optimum	1	%

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Observation

resistant to gamma radiation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66614]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #66614]	casein	-	hydrolysis
[Ref.: #66614]	citric acid ChEBI	+	carbon source
[Ref.: #66614]	D-glucose ChEBI	+	carbon source
[Ref.: #66614]	D-sorbitol ChEBI	+	carbon source
[Ref.: #66614]	esculin ChEBI	+	hydrolysis
[Ref.: #66614]	gelatin ChEBI	-	hydrolysis
[Ref.: #66614]	glucose ChEBI	-	fermentation
[Ref.: #66614]	L-alanine ChEBI	+	carbon source
[Ref.: #66614]	L-arabinose ChEBI	+	carbon source
[Ref.: #66614]	L-histidine ChEBI	+	carbon source
[Ref.: #66614]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66614]	lactate ChEBI	+	carbon source
[Ref.: #66614]	malonate ChEBI	+	carbon source
[Ref.: #66614]	melibiose ChEBI	+	carbon source
[Ref.: #66614]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66614]	nitrate ChEBI	+/-	reduction
[Ref.: #66614]	starch ChEBI	-	hydrolysis
[Ref.: #66614]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66614]	tween 40 ChEBI	+	hydrolysis
[Ref.: #66614]	tween 60 ChEBI	-	hydrolysis
[Ref.: #66614]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66614]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66614]	acid phosphatase	+	3.1.3.2
[Ref.: #66614]	alkaline phosphatase	-	3.1.3.1
[Ref.: #66614]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66614]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66614]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66614]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66614]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66614]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66614]	beta-galactosidase	+	3.2.1.23
[Ref.: #66614]	beta-glucosidase	+	3.2.1.21
[Ref.: #66614]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66614]	catalase	+	1.11.1.6
[Ref.: #66614]	cystine arylamidase	-	3.4.11.3
[Ref.: #66614]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66614]	esterase (C 4)	+
[Ref.: #66614]	esterase Lipase (C 8)	+
[Ref.: #66614]	leucine arylamidase	-	3.4.11.1
[Ref.: #66614]	lipase (C 14)	-
[Ref.: #66614]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66614]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #66614]	trypsin	-	3.4.21.4
[Ref.: #66614]	urease	-	3.5.1.5
[Ref.: #66614]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66614]

Fatty acid	Percentage
C16:1 w7c / C16:1 w6c	25.2
C16:0	21.2
C17:1 w8c	8.8
C17:0	7.2
C17:1 iso w9c / C16:0 10-methyl	4.2
C18:0	4.2
C13:0 2OH	3.7
C15:0 anteiso	2.8
C18:1 w9c	2.5
C16:1 w9c	2.5
c17:0 cyclo	2.4
C17:0 iso	2.4
C15:0 iso	1.8
C15:1 iso F	1.5
C13:0 iso 3OH	1.3
C15:1 w6c	1.2
C16:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66614]	Sample type/isolated from	river surface water
[Ref.: #66614]	Geographic location (country and/or sea, region)	Seomjin River, Gwangyang-si, Jeollanam-do
[Ref.: #66614]	Country	Republic of Korea
[Ref.: #66614]	Country ISO 3 Code	KOR
[Ref.: #66614]	Continent	Asia
[Ref.: #66614]	Geographic location	35.0634°/127.7410°
[Ref.: #66614]	Enrichment culture	R2A
[Ref.: #66614]	Enrichment culture duration	30 days
[Ref.: #66614]	Enrichment culture temperature	20 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66614]	Deinococcus sp. SJW1-2 16S ribosomal RNA gene, partial sequence	MF669554	1442	ENA	2054903 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus koreensis SJW1-2	GCA_002901445	contig	GenBank	2054903 tax ID	*
[Ref.: #66792]	Deinococcus koreensis SJW1-2	2895820470	draft	JGI IMG/M	2054903 tax ID	*

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GC-content

69.50 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

KACC 19332, NBRC 112908

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Deinococcus koreensis SJW1-2(T), a Gamma Radiation-Resistant Bacterium Isolated from River Water.	Baek K, Chung EJ, Choi GG, Nam YH, Choi A	Microbiol Resour Announc	10.1128/MRA.00894-18	2018	*
Phylogeny	Deinococcus koreensis sp. nov., a gamma radiation-resistant bacterium isolated from river water.	Baek K, Chung EJ, Choi GG, Kim MK, Lim S, Choi A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002872	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66614

Kiwoon Baek, Eu Jin Chung, Gang-Guk Choi, Min-Kyu Kim, Sangyong Lim and Ahyoung Choi: Deinococcus koreensis sp. nov., a gamma radiation-resistant bacterium isolated from river water. IJSEM 68: 2545 - 2550 2018 ( DOI 10.1099/ijsem.0.002872 , PubMed 29932388 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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