Name: Simulacricoccus ruber MCy10636
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159830

Type strain:

Species: Simulacricoccus ruber

Strain Designation: MCy10636

Culture col. no.: DSM 106554, NCCB 100651

Strain history: <- R. Garcia, Helmholtz Institute for Pharmaceutical Research (HIPS), Saarbrücken, Germany; MCy10636

NCBI tax ID(s): 2303410 (species)

SI-ID 401452

DSM 106554

Section

Simulacricoccus ruber MCy10636 is a microaerotolerant, spore-forming, mesophilic bacterium that was isolated from fresh soil sample.

Gram-negative
motile
rod-shaped
spore-forming
mesophilic
microaerotolerant
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Simulacricoccus*
	Species	**Simulacricoccus ruber**
	Full Scientific Name (LPSN)	Simulacricoccus ruber Garcia and Müller 2018

Information on morphological and physiological properties Morphology

[Ref.: #66665]	Gram stain	negative

[Ref.: #66665]	Cell length	3.0-6.0 µm

[Ref.: #66665]	Cell width	0.6-0.7 µm

[Ref.: #66665]	Cell shape	rod-shaped

[Ref.: #66665]	Motility	yes

[Ref.: #66665]	Incubation period	5-7 days
[Ref.: #66665]	Cultivation medium used	tryptone-based agar

Multimedia content

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Caption:

Vegetative cells (rods) and myxospores (big cocci)

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Intellectual property rights:

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Caption:

DSM 106554 on M. 830 at 28 °C

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #66665]		optimum	30 °C
[Ref.: #66665]	no	growth	0-18 °C
[Ref.: #66665]		growth	18-34 °C
[Ref.: #69032]		growth	28 °C

[Ref.: #66665]	Temperature range	mesophilic
[Ref.: #66665]	Temperature range	psychrophilic
[Ref.: #69032]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #66665]		optimum	7
[Ref.: #66665]	no	growth	0-6
[Ref.: #66665]		growth	6-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

microaerotolerant

[Ref.: #66665]	Spore description	Myxospores are refractive, small (1.2–1.4 µm diameter), rounded with a dark coat, arranged as a sheath and desiccation-resistant.
[Ref.: #66665]	Type of spore	myxospore
[Ref.: #66665]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66665]		NaCl		growth	0-0.6	%
[Ref.: #66665]		NaCl		optimum	0	%(w/v)

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Observation

Vegetative cells are phase-dark, thin, flexuous rods

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66665]	agar ChEBI	-	degradation
[Ref.: #66665]	casamino acids	+	growth
[Ref.: #66665]	casitone	+	growth
[Ref.: #66665]	cellulose ChEBI	-	degradation
[Ref.: #66665]	chitin ChEBI	-	degradation
[Ref.: #66665]	peptone	+	growth
[Ref.: #66665]	polypeptone	+	growth
[Ref.: #66665]	proteose	+	growth
[Ref.: #66665]	skimmed milk	+	hydrolysis
[Ref.: #66665]	soyton	+	growth
[Ref.: #66665]	starch ChEBI	+	hydrolysis
[Ref.: #66665]	tryptone	+	growth
[Ref.: #66665]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66665]	tween 80 ChEBI	+	hydrolysis
[Ref.: #66665]	xylan ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66665]	acid phosphatase	+	3.1.3.2
[Ref.: #66665]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66665]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66665]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66665]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66665]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66665]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66665]	beta-galactosidase	-	3.2.1.23
[Ref.: #66665]	beta-glucosidase	+	3.2.1.21
[Ref.: #66665]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66665]	catalase	-	1.11.1.6
[Ref.: #66665]	cystine arylamidase	+	3.4.11.3
[Ref.: #66665]	cytochrome oxidase	-	1.9.3.1
[Ref.: #66665]	esterase (C 4)	+
[Ref.: #66665]	esterase Lipase (C 8)	+
[Ref.: #66665]	leucine arylamidase	+	3.4.11.1
[Ref.: #66665]	lipase (C 14)	+
[Ref.: #66665]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66665]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66665]	trypsin	+	3.4.21.4
[Ref.: #66665]	valine arylamidase	+
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Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66665]	Sample type/isolated from	fresh soil sample
[Ref.: #66665]	Sampling date	2013
[Ref.: #66665]	Geographic location (country and/or sea, region)	Saarbrücken
[Ref.: #66665]	Country	Germany
[Ref.: #66665]	Country ISO 3 Code	DEU
[Ref.: #66665]	Continent	Europe
[Ref.: #66665]	Enrichment culture	MS21 agar
[Ref.: #66665]	Enrichment culture composition	baited with a filter paper
[Ref.: #66665]	Enrichment culture duration	3 days
[Ref.: #66665]	Isolation/enrichment procedure	After 3 days of incubation as a tiny swarming colony on MS21 agar baited with a filter paper. After repeated transfers of the swarm colony edge, the strain was purified and isolated.
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66665]	Cystobacterineae bacterium strain MCy10636 16S ribosomal RNA gene, partial sequence	MH094235	1526	ENA	2303410 tax ID

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GC-content

72.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 106554, NCCB 100651

[Ref.: #112173]

SI-ID 401452

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae.	Garcia R, Muller R	Int J Syst Evol Microbiol	10.1099/ijsem.0.002936	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66665

Ronald Garcia, Rolf Müller: Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae Free. IJSEM 68: 3101 - 3110 2018 ( DOI 10.1099/ijsem.0.002936 , PubMed 30113300 )

#69032

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106554

#112173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401452.1 )

* These data were automatically processed and therefore are not curated

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