Streptacidiphilus pinicola (KCTC 49008, JCM 32300, MMS16-CNU450)

Name: Streptacidiphilus pinicola (KCTC 49008, JCM 32300, MMS16-CNU450)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159753

Type strain

Strain Designation MMS16-CNU450

Culture col. no. KCTC 49008 JCM 32300 MMS16-CNU450

NCBI tax ID(s) 2219663

Special Collections JCM KCTC Literature strains

History S. B. Kim; Chungnam Natl. Univ., South Korea; MMS16-CNU450. <- Seung Bum Kim, Chungnam National Univ.

Links

Streptacidiphilus pinicola MMS16-CNU450 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from pine grove soil .

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287435

KCTC 49008,JCM 32300

@ref 20215

Last LPSN update 2026-02-09 11:38:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptacidiphilus

Species Streptacidiphilus pinicola

Full scientific name Streptacidiphilus pinicola Roh et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Confidence
66683	positive
125439	positive	100
125439		93.5

Multicellular morphology

@ref	Forms multicellular complex	Complex color	Medium name	Further description
66683		yellowish-brown, beige	acidified starch casein agar, ISP2 agar, ISP3 agar, modified Bennett's agar and potato dextrose agar plates	actinobacterium forming yellowish-brown and beige substrate mycelium and abundant yellowish brown, ivory, beige and dark beige aerialmycelium

Culture and growth conditions

Culture medium

@ref	Name	Growth
66683	acidified starch casein agar
66683	Czapek-Dox agar
66683	ISP 2
66683	ISP 3
66683	ISP 4
66683	ISP 5
66683	ISP 6
66683	ISP 7
66683	modified Bennett's agar
66683	Nutrient agar (NA)
66683	potato dextrose agar
66683	tryptic soy agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
66683	positive	optimum	30
66683	positive	growth	15-33
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
66683	positive	optimum	6
66683	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66683	aerobe
67771	aerobe
125439	obligate aerobe	99.5

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
66683	Aerial mycelia differentiate into straight chains of spores (0.6 x 0.9 µm), and the spore surface is smooth.	spore
125439				95.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66683	NaCl	positive	growth	0-3 %
66683	NaCl	positive	optimum	0.5 %

Observation

@ref	Observation
66683	Yellowish brown and beige soluble pigments are formed on acidified starch casein agar and ISP2 agar.
67770	quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66683	17128 ChEBI	adipate	-	carbon source
66683	22599 ChEBI	arabinose	-	carbon source
66683		casein	-	degradation
66683	62968 ChEBI	cellulose	-	degradation
66683	17029 ChEBI	chitin	+	degradation
66683	16261 ChEBI	chitosan	-	degradation
66683	53258 ChEBI	citric acid	-	carbon source
66683	27689 ChEBI	decanoate	-	carbon source
66683	16991 ChEBI	dna	+	degradation
66683	24265 ChEBI	gluconate	+	carbon source
66683	17234 ChEBI	glucose	+	carbon source
66683	17368 ChEBI	hypoxanthine	+	degradation
66683	16977 ChEBI	L-alanine	+	nitrogen source
66683	16467 ChEBI	L-arginine	-	nitrogen source
66683	17196 ChEBI	L-asparagine	+	nitrogen source
66683	29991 ChEBI	L-aspartate	+	nitrogen source
66683	17561 ChEBI	L-cysteine	-	nitrogen source
66683	15971 ChEBI	L-histidine	-	nitrogen source
66683	17191 ChEBI	L-isoleucine	+	nitrogen source
66683	17295 ChEBI	L-phenylalanine	+	nitrogen source
66683	17115 ChEBI	L-serine	+	nitrogen source
66683	16857 ChEBI	L-threonine	+	nitrogen source
66683	16414 ChEBI	L-valine	+	nitrogen source
66683	25115 ChEBI	malate	-	carbon source
66683	17306 ChEBI	maltose	-	carbon source
66683	29864 ChEBI	mannitol	+	carbon source
66683	37684 ChEBI	mannose	-	carbon source
66683	59640 ChEBI	N-acetylglucosamine	+	carbon source
66683	18401 ChEBI	phenylacetate	-	carbon source
66683	28017 ChEBI	starch	+	degradation
66683	35020 ChEBI	tributyrin	-	degradation
66683	53424 ChEBI	tween 20	-	degradation
66683	53423 ChEBI	tween 40	+	degradation
66683	53426 ChEBI	tween 80	-	degradation
66683	18186 ChEBI	tyrosine	-	degradation

Enzymes

@ref	Value	Activity	Ec
66683	acid phosphatase	+	3.1.3.2
66683	alkaline phosphatase	-	3.1.3.1
66683	alpha-chymotrypsin	-	3.4.21.1
66683	alpha-fucosidase	-	3.2.1.51
66683	alpha-galactosidase	+	3.2.1.22
66683	alpha-glucosidase	-	3.2.1.20
66683	alpha-mannosidase	-	3.2.1.24
66683	beta-galactosidase	+	3.2.1.23
66683	beta-glucosidase	+	3.2.1.21
66683	beta-glucuronidase	-	3.2.1.31
66683	cystine arylamidase	+	3.4.11.3
66683	esterase (C 4)	+
66683	esterase Lipase (C 8)	+
66683	leucine arylamidase	+	3.4.11.1
66683	lipase (C 14)	-
66683	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66683	naphthol-AS-BI-phosphohydrolase	+
66683	trypsin	+	3.4.21.4
66683	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66683

Fatty acid	Percentage
C16:0 iso	40
C15:0 iso	12.7
C15:0 anteiso	10.4
C16:0	9.8
C14:0 iso	7.1
C17:0 anteiso	4.2
C16:1 iso H	4
C17:0 iso	3.2
C16:1 w7c/ C16:1 w6c	2.3
C17:1 iso w9c / C16:0 10-methyl	1.7
C17:0 cyclo	1.2
C17:1 anteiso w9c	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Grove (Orchard)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition
66683	pine grove soil (pH 4.54)	Daejeon	Republic of Korea	KOR	Asia	36.3702	127.351 36.3702/127.351	ISP2	adjusted to pH 5.0 and supplemented with antifungal antibiotics cycloheximide and nystatin (each at 50 µg ml-1 final concentration)
67770	Acidic pine grove soil from Daejeon		Republic of Korea	KOR	Asia
67771	From soil	Chungnam National University	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence MG189375 (>99% sequence identity) for Streptacidiphilus from Microbeatlas

Aquatic Samples	2
Soil Samples	10
Animal Samples
Plant Samples
Total Samples	12

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM325829v1 assembly for Streptacidiphilus pinicola MMS16-CNU450	scaffold	GCA_003258295	2219663.3	2856758937	2219663	5.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66683	Streptacidiphilus pinicola strain MMS16-CNU450 16S ribosomal RNA gene, partial sequence	MG189375	1450		2219663

GC content

@ref	GC-content (mol%)	Method
67770	68.3-68.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptacidiphilus pinicola MMS16-CNU450
NCBI: GCA_003258295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.30	no
125439	motility	BacteriaNetⓘ	no	93.50	no
125439	gram_stain	BacteriaNetⓘ	positive	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptacidiphilus pinicola sp. nov., isolated from pine grove soil.	Roh SG, Kim MK, Park S, Yun BR, Park J, Kim MJ, Kim YS, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002957	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66683	Su Gwon Roh, Min-Kyeong Kim, Sewook Park, Bo-Ram Yun, Jisun Park, Min Ji Kim, Yeong Seok Kim, Seung Bum Kim: Streptacidiphilus pinicola sp. nov., isolated from pine grove soil. IJSEM 68: 3149 - 3155 2018 ( DOI 10.1099/ijsem.0.002957 , PubMed 30102143 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptacidiphilus pinicola (KCTC 49008, JCM 32300, MMS16-CNU450)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003258295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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