Name: Arenimonas caeni z29
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159746

Type strain:

Species: Arenimonas caeni

Strain Designation: z29

Culture col. no.: JCM 32091, CCTCC AB 2017067

Strain history: H. Liu; Anhui Normal Univ., China; z29.

NCBI tax ID(s): 2058085 (species)

Special Collections

Section

Arenimonas caeni z29 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from activated sludge in a municipal wastewater treatment plant.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Arenimonas*
	Species	**Arenimonas caeni**
	Full Scientific Name (LPSN)	Arenimonas caeni Liu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66666]	Gram stain	negative

[Ref.: #66666]	Cell length	1.3-2.2 µm

[Ref.: #66666]	Cell width	0.2-0.5 µm

[Ref.: #66666]	Cell shape	rod-shaped

[Ref.: #66666]	Motility	yes

[Ref.: #66666]	Colony color	yellowish
[Ref.: #66666]	Colony shape	circular
[Ref.: #66666]	Incubation period	2 days
[Ref.: #66666]	Cultivation medium used	LB (Luria-Bertani) agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66666]

Culture medium

LB (Luria-Bertani) agar

[Ref.: #66666]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #66666]	no	growth	10 °C
[Ref.: #66666]		optimum	30 °C
[Ref.: #66666]	no	growth	45 °C
[Ref.: #66666]		growth	15-42 °C
[Ref.: #67770]		growth	30 °C

	pH	Kind of pH		pH
[Ref.: #66666]			optimum	7-8
[Ref.: #66666]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66666]

Oxygen tolerance

aerobe

[Ref.: #66666]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #66666]	NaCl		growth	0-3	%(w/v)
[Ref.: #66666]	NaCl		optimum	0-1	%(w/v)
[Ref.: #66666]	NaCl	no	growth	4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66666]	adipate ChEBI	-	assimilation
[Ref.: #66666]	amygdalin ChEBI	-	builds acid from
[Ref.: #66666]	arbutin ChEBI	-	builds acid from
[Ref.: #66666]	cellobiose ChEBI	-	builds acid from
[Ref.: #66666]	cellulose ChEBI	-	hydrolysis
[Ref.: #66666]	chitin ChEBI	-	hydrolysis
[Ref.: #66666]	D-arabinose ChEBI	-	builds acid from
[Ref.: #66666]	D-arabitol ChEBI	-	builds acid from
[Ref.: #66666]	D-fructose ChEBI	-	builds acid from
[Ref.: #66666]	D-fucose ChEBI	-	builds acid from
[Ref.: #66666]	D-galactose ChEBI	-	builds acid from
[Ref.: #66666]	D-glucose ChEBI	-	assimilation
[Ref.: #66666]	D-glucose ChEBI	-	builds acid from
[Ref.: #66666]	D-glucose ChEBI	-	fermentation
[Ref.: #66666]	D-lyxose ChEBI	-	builds acid from
[Ref.: #66666]	D-mannitol ChEBI	-	assimilation
[Ref.: #66666]	D-mannitol ChEBI	-	builds acid from
[Ref.: #66666]	D-mannose ChEBI	-	assimilation
[Ref.: #66666]	D-mannose ChEBI	-	builds acid from
[Ref.: #66666]	D-ribose ChEBI	-	builds acid from
[Ref.: #66666]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #66666]	D-tagatose ChEBI	-	builds acid from
[Ref.: #66666]	D-xylose ChEBI	-	builds acid from
[Ref.: #66666]	decanoate ChEBI	-	assimilation
[Ref.: #66666]	dna ChEBI	+	hydrolysis
[Ref.: #66666]	erythritol ChEBI	-	builds acid from
[Ref.: #66666]	esculin ferric citrate	-	builds acid from
[Ref.: #66666]	galactitol ChEBI	-	builds acid from
[Ref.: #66666]	gelatin ChEBI	+	hydrolysis
[Ref.: #66666]	gentiobiose ChEBI	-	builds acid from
[Ref.: #66666]	glycerol ChEBI	-	builds acid from
[Ref.: #66666]	glycogen ChEBI	-	builds acid from
[Ref.: #66666]	inulin ChEBI	-	builds acid from
[Ref.: #66666]	L-arabinose ChEBI	-	assimilation
[Ref.: #66666]	L-arabinose ChEBI	-	builds acid from
[Ref.: #66666]	L-arabitol ChEBI	-	builds acid from
[Ref.: #66666]	L-fucose ChEBI	-	builds acid from
[Ref.: #66666]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #66666]	L-sorbose ChEBI	-	builds acid from
[Ref.: #66666]	L-xylose ChEBI	-	builds acid from
[Ref.: #66666]	lactose ChEBI	-	builds acid from
[Ref.: #66666]	malate ChEBI	-	assimilation
[Ref.: #66666]	maltose ChEBI	-	assimilation
[Ref.: #66666]	maltose ChEBI	-	builds acid from
[Ref.: #66666]	melezitose ChEBI	-	builds acid from
[Ref.: #66666]	melibiose ChEBI	-	builds acid from
[Ref.: #66666]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #66666]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #66666]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #66666]	myo-inositol ChEBI	-	builds acid from
[Ref.: #66666]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #66666]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #66666]	nitrate ChEBI	-	reduction
[Ref.: #66666]	phenylacetate ChEBI	-	assimilation
[Ref.: #66666]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #66666]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #66666]	potassium gluconate ChEBI	-	assimilation
[Ref.: #66666]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #66666]	raffinose ChEBI	-	builds acid from
[Ref.: #66666]	ribitol ChEBI	-	builds acid from
[Ref.: #66666]	salicin ChEBI	-	builds acid from
[Ref.: #66666]	sodium citrate ChEBI	-	assimilation
[Ref.: #66666]	starch ChEBI	-	builds acid from
[Ref.: #66666]	starch ChEBI	-	hydrolysis
[Ref.: #66666]	sucrose ChEBI	-	builds acid from
[Ref.: #66666]	trehalose ChEBI	-	builds acid from
[Ref.: #66666]	turanose ChEBI	-	builds acid from
[Ref.: #66666]	urea ChEBI	-	hydrolysis
[Ref.: #66666]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66666]		acetoin ChEBI	no
[Ref.: #66666]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #66666]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #66666]	acid phosphatase	+	3.1.3.2
[Ref.: #66666]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66666]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66666]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66666]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66666]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66666]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66666]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66666]	beta-galactosidase	-	3.2.1.23
[Ref.: #66666]	beta-glucosidase	-	3.2.1.21
[Ref.: #66666]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66666]	catalase	+	1.11.1.6
[Ref.: #66666]	cystine arylamidase	-	3.4.11.3
[Ref.: #66666]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66666]	esterase (C 4)	+
[Ref.: #66666]	esterase Lipase (C 8)	+
[Ref.: #66666]	leucine arylamidase	+	3.4.11.1
[Ref.: #66666]	lipase (C 14)	-
[Ref.: #66666]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66666]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #66666]	trypsin	+	3.4.21.4
[Ref.: #66666]	urease	-	3.5.1.5
[Ref.: #66666]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66666]	Sample type/isolated from	activated sludge in a municipal wastewater treatment plant
[Ref.: #66666]	Geographic location (country and/or sea, region)	Wuhu, Anhui
[Ref.: #66666]	Country	China
[Ref.: #66666]	Country ISO 3 Code	CHN
[Ref.: #66666]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Activated sludge in a municipal wastewater treatment plant at Wuhu
[Ref.: #67770]	Geographic location (country and/or sea, region)	Anhui
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG603321 (>99% sequence identity) for Arenimonas caeni from Microbeatlas

Aquatic Samples	398
Soil Samples	259
Animal Samples	94
Plant Samples	30
Total Samples	781

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66666]	Arenimonas caeni strain z29 16S ribosomal RNA gene, partial sequence	MG603321	1506	GenBank ENA	2058085 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Arenimonas caeni z29	GCA_003024235	scaffold	GenBank ENA	2058085 tax ID
[Ref.: #66792]	Arenimonas caeni z29	2835097387	draft	JGI IMG/M	2058085 tax ID	*

[Ref.: #66666]

GC-content

70.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arenimonas caeni z29 NCBI: GCA_003024235.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

Availability in culture collections External links

[Ref.: #66666]

Culture collection no.

JCM 32091, CCTCC AB 2017067

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas caeni sp. nov., isolated from activated sludge.	Liu H, Ren L, Lu P, Sun L, Zhu G	Int J Syst Evol Microbiol	10.1099/ijsem.0.002937	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66666

Hongming Liu, Lei Ren, Peng Lu, Lina Sun, Guoping Zhu: Arenimonas caeni sp. nov., isolated from activated sludge. IJSEM 68: 2996 - 3000 2018 ( DOI 10.1099/ijsem.0.002937 , PubMed 30040064 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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