Name: Shewanella ulleungensis MMS16-UL253
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159742

Type strain:

Species: Shewanella ulleungensis

Strain Designation: MMS16-UL253

Culture col. no.: KCTC 62130, JCM 32305

Strain history: <- Seung Bum Kim, Chungnam National Univ.

NCBI tax ID(s): 2282699 (species)

Special Collections

Section

Shewanella ulleungensis MMS16-UL253 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface seawater sample.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella ulleungensis**
	Full Scientific Name (LPSN)	Shewanella ulleungensis Yun et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66659]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #66659]	Cell length	1.5-3.4 µm

[Ref.: #66659]	Cell width	0.8-1 µm

[Ref.: #66659]	Cell shape	rod-shaped

[Ref.: #66659]	Motility	yes

[Ref.: #66659]	Flagellum arrangement	gliding

[Ref.: #66659]	Colony color	pale pink
[Ref.: #66659]	Colony shape	circular
[Ref.: #66659]	Incubation period	3 days
[Ref.: #66659]	Cultivation medium used	Marine agar (MA) 2216

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #66659]	optimum	25 °C
[Ref.: #66659]	growth	4-30 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #66659]			optimum	7
[Ref.: #66659]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66659]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66659]		NaCl		growth	0-8	%(w/v)
[Ref.: #66659]		NaCl		optimum	2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66659]	adipate ChEBI	-	assimilation
[Ref.: #66659]	D-glucose ChEBI	-	assimilation
[Ref.: #66659]	D-mannitol ChEBI	-	assimilation
[Ref.: #66659]	D-mannose ChEBI	-	assimilation
[Ref.: #66659]	decanoate ChEBI	-	assimilation
[Ref.: #66659]	esculin ChEBI	+	hydrolysis
[Ref.: #66659]	gelatin ChEBI	+	hydrolysis
[Ref.: #66659]	glucose ChEBI	-	fermentation
[Ref.: #66659]	L-arabinose ChEBI	-	assimilation
[Ref.: #66659]	malate ChEBI	-	assimilation
[Ref.: #66659]	maltose ChEBI	+	assimilation
[Ref.: #66659]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #66659]	nitrate ChEBI	+	reduction
[Ref.: #66659]	O-nitrophenyl-beta-D-galactopyranosid	+	hydrolysis
[Ref.: #66659]	phenylacetate ChEBI	-	assimilation
[Ref.: #66659]	potassium gluconate ChEBI	-	assimilation
[Ref.: #66659]	sodium citrate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66659]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66659]	acid phosphatase	+	3.1.3.2
[Ref.: #66659]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66659]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66659]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66659]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66659]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66659]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66659]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66659]	beta-galactosidase	-	3.2.1.23
[Ref.: #66659]	beta-glucosidase	-	3.2.1.21
[Ref.: #66659]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66659]	catalase	+	1.11.1.6
[Ref.: #66659]	cystine arylamidase	+	3.4.11.3
[Ref.: #66659]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66659]	esterase (C 4)	+
[Ref.: #66659]	esterase Lipase (C 8)	+
[Ref.: #66659]	leucine arylamidase	+	3.4.11.1
[Ref.: #66659]	lipase (C 14)	-
[Ref.: #66659]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66659]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66659]	trypsin	-	3.4.21.4
[Ref.: #66659]	urease	-	3.5.1.5
[Ref.: #66659]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66659]	Sample type/isolated from	surface seawater sample
[Ref.: #66659]	Sampling date	2016-02
[Ref.: #66659]	Geographic location (country and/or sea, region)	Ulleung island
[Ref.: #66659]	Country	Republic of Korea
[Ref.: #66659]	Country ISO 3 Code	KOR
[Ref.: #66659]	Continent	Asia
[Ref.: #66659]	Geographic location	37.4707°/130.8840°
[Ref.: #66659]	Enrichment culture	marine agar 2216
[Ref.: #66659]	Enrichment culture duration	1 week
[Ref.: #66659]	Enrichment culture temperature	25 ̊C
[Ref.: #66659]	Isolation/enrichment procedure	dilution-plating technique

[Ref.: #67770]	Sample type/isolated from	Coastal seawater from Ulleung island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ulleung-eup, Ulleung-gun, North Gyeongsang Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY047616 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	2798
Soil Samples	71
Animal Samples	284
Plant Samples	4
Total Samples	3157

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66659]	Shewanella ulleungensis strain MMS16-UL253 16S ribosomal RNA gene, partial sequence	KY047616	1468	GenBank ENA	2282699 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella ulleungensis JCM 32305	GCA_014648315	contig	GenBank ENA	2282699 tax ID	*
[Ref.: #66792]	Shewanella ulleungensis strain JCM 32305	2282699.3	wgs	PATRIC	2282699 tax ID	*
[Ref.: #66792]	Shewanella ulleungensis KCTC 62130	GCA_023283965	contig	GenBank ENA	2282699 tax ID	*

[Ref.: #66659]

GC-content

42.1 mol%

Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella ulleungensis strain JCM 32305 PATRIC: 2282699.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella ulleungensis strain JCM 32305 PATRIC: 2282699.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.942	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.265	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	58.042	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.925	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.808	no

Availability in culture collections External links

[Ref.: #66659]

Culture collection no.

KCTC 62130, JCM 32305

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella saliphila sp. nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater.	Yun BR, Park S, Kim MK, Park J, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002929	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66659

Bo-Ram Yun, Sunjoo Park, Min-Kyeong Kim, Jisun Park, Seung Bum Kim: Shewanella saliphila sp. Nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater. IJSEM 68: 2960 - 2966 2018 ( DOI 10.1099/ijsem.0.002929 , PubMed 30028285 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Shewanella ulleungensis strain JCM 32305

Shewanella ulleungensis strain JCM 32305

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