Shewanella litoralis (KCTC 62129, JCM 32306, MMS16-UL482)

Name: Shewanella litoralis (KCTC 62129, JCM 32306, MMS16-UL482)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159740

Type strain

Strain Designation MMS16-UL482

Culture col. no. KCTC 62129 JCM 32306 MMS16-UL482

NCBI tax ID(s) 2282700

Special Collections JCM KCTC Literature strains

History S. B. Kim; Chungnam Natl. Univ., South Korea; MMS16-UL482. <- Seung Bum Kim, Chungnam National Univ.

Links

Shewanella litoralis MMS16-UL482 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface seawater sample.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26656

KCTC 62129,JCM 32306

@ref 20215

Last LPSN update 2026-02-09 11:38:43

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella litoralis

Full scientific name Shewanella litoralis Yun et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
66659	negative	2.1-3.3 µm	0.9-1 µm	rod-shaped	gliding
125439	negative					99.4
125438						90.409
125438	negative					98.5

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
66659	pale pink	circular	3 days	Marine agar (MA) 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
66659	Marine agar (MA) 2216

Culture temp

@ref	Growth	Type	Temperature (°C)
66659	positive	optimum	25
66659	positive	growth	4-30
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
66659	positive	optimum	7
66659	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66659	aerobe
67771	aerobe
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125439		99.6
125438		91.565

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66659	NaCl	positive	growth	0.5-6.5 %(w/v)
66659	NaCl	positive	optimum	2.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66659	17128 ChEBI	adipate	-	assimilation
66659	17634 ChEBI	D-glucose	-	assimilation
66659	16899 ChEBI	D-mannitol	-	assimilation
66659	16024 ChEBI	D-mannose	-	assimilation
66659	27689 ChEBI	decanoate	-	assimilation
66659	4853 ChEBI	esculin	+	hydrolysis
66659	5291 ChEBI	gelatin	-	hydrolysis
66659	17234 ChEBI	glucose	-	fermentation
66659	30849 ChEBI	L-arabinose	-	assimilation
66659	25115 ChEBI	malate	-	assimilation
66659	17306 ChEBI	maltose	-	assimilation
66659	59640 ChEBI	N-acetylglucosamine	-	assimilation
66659		O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
66659	18401 ChEBI	phenylacetate	-	assimilation
66659	32032 ChEBI	potassium gluconate	-	assimilation
66659	53258 ChEBI	sodium citrate	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66659	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66659	acid phosphatase	+	3.1.3.2
66659	alkaline phosphatase	+	3.1.3.1
66659	alpha-chymotrypsin	+	3.4.21.1
66659	alpha-fucosidase	-	3.2.1.51
66659	alpha-galactosidase	+	3.2.1.22
66659	alpha-glucosidase	+	3.2.1.20
66659	alpha-mannosidase	+	3.2.1.24
66659	arginine dihydrolase	-	3.5.3.6
66659	beta-galactosidase	+	3.2.1.23
66659	beta-glucosidase	-	3.2.1.21
66659	beta-glucuronidase	-	3.2.1.31
66659	catalase	+	1.11.1.6
66659	cystine arylamidase	+	3.4.11.3
66659	cytochrome oxidase	+	1.9.3.1
66659	esterase (C 4)	+
66659	esterase Lipase (C 8)	+
66659	leucine arylamidase	+	3.4.11.1
66659	lipase (C 14)	+
66659	N-acetyl-beta-glucosaminidase	-	3.2.1.52
66659	naphthol-AS-BI-phosphohydrolase	+
66659	trypsin	-	3.4.21.4
66659	urease	-	3.5.1.5
66659	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66659	surface seawater sample	2016-02	Ulleung island	Republic of Korea	KOR	Asia	37.4707	130.884 37.4707/130.884	marine agar 2216	1 week	25	dilution-plating technique
67770	Coastal seawater from Ulleung island			Republic of Korea	KOR	Asia
67771	From soil		Ulleung-eup, Ulleung-gun, North Gyeongsang Province	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464833v1 assembly for Shewanella litoralis JCM 32306	scaffold	GCA_014648335	2282700.8		2282700	57.85
66792	ASM982858v1 assembly for Shewanella litoralis JCM 32306	scaffold	GCA_009828585	2282700.5	2900453558	2282700	40.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66659	Shewanella litoralis strain MMS16-UL482 16S ribosomal RNA gene, partial sequence	KX621128	1392		2282700
124043	Shewanella litoralis strain JCM 32306 16S ribosomal RNA gene, partial sequence.	MT760426	1380		2282700

GC content

@ref	GC-content (mol%)	Method
66659	43.7	Thermal denaturation, fluorometry

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella litoralis JCM 32306
NCBI: GCA_014648335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	82.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella litoralis JCM 32306
NCBI: GCA_014648335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	94.94	yes
125438	aerobic	aerobicⓘ	yes	61.97	yes
125438	spore-forming	spore-formingⓘ	no	91.57	no
125438	thermophilic	thermophileⓘ	no	97.45	no
125438	flagellated	motile2+ⓘ	yes	90.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella saliphila sp. nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater.	Yun BR, Park S, Kim MK, Park J, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002929	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66659	Bo-Ram Yun, Sunjoo Park, Min-Kyeong Kim, Jisun Park, Seung Bum Kim: Shewanella saliphila sp. Nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater. IJSEM 68: 2960 - 2966 2018 ( DOI 10.1099/ijsem.0.002929 , PubMed 30028285 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella litoralis (KCTC 62129, JCM 32306, MMS16-UL482)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014648335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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