Name: Shewanella litoralis MMS16-UL482
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159740

Type strain:

Species: Shewanella litoralis

Strain Designation: MMS16-UL482

Culture col. no.: KCTC 62129, JCM 32306

Strain history: <- Seung Bum Kim, Chungnam National Univ.

NCBI tax ID(s): 2282700 (species)

Section

Shewanella litoralis MMS16-UL482 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from surface seawater sample.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella litoralis**
	Full Scientific Name (LPSN)	Shewanella litoralis Yun et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66659]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #66659]	Cell length	2.1-3.3 µm

[Ref.: #66659]	Cell width	0.9-1 µm

[Ref.: #66659]	Cell shape	rod-shaped

[Ref.: #66659]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.084

[Ref.: #66659]	Flagellum arrangement	gliding

[Ref.: #66659]	Colony color	pale pink
[Ref.: #66659]	Colony shape	circular
[Ref.: #66659]	Incubation period	3 days
[Ref.: #66659]	Cultivation medium used	Marine agar (MA) 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66659]

Culture medium

Marine agar (MA) 2216

[Ref.: #66659]

Culture medium growth

		Temperature
[Ref.: #66659]	optimum	25 °C
[Ref.: #66659]	growth	4-30 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #66659]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66659]			optimum	7
[Ref.: #66659]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66659]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66659]		NaCl		growth	0.5-6.5	%(w/v)
[Ref.: #66659]		NaCl		optimum	2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66659]	adipate ChEBI	-	assimilation
[Ref.: #66659]	D-glucose ChEBI	-	assimilation
[Ref.: #66659]	D-mannitol ChEBI	-	assimilation
[Ref.: #66659]	D-mannose ChEBI	-	assimilation
[Ref.: #66659]	decanoate ChEBI	-	assimilation
[Ref.: #66659]	esculin ChEBI	+	hydrolysis
[Ref.: #66659]	gelatin ChEBI	-	hydrolysis
[Ref.: #66659]	glucose ChEBI	-	fermentation
[Ref.: #66659]	L-arabinose ChEBI	-	assimilation
[Ref.: #66659]	malate ChEBI	-	assimilation
[Ref.: #66659]	maltose ChEBI	-	assimilation
[Ref.: #66659]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #66659]	O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
[Ref.: #66659]	phenylacetate ChEBI	-	assimilation
[Ref.: #66659]	potassium gluconate ChEBI	-	assimilation
[Ref.: #66659]	sodium citrate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66659]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66659]	acid phosphatase	+	3.1.3.2
[Ref.: #66659]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66659]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66659]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66659]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66659]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66659]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66659]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66659]	beta-galactosidase	+	3.2.1.23
[Ref.: #66659]	beta-glucosidase	-	3.2.1.21
[Ref.: #66659]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66659]	catalase	+	1.11.1.6
[Ref.: #66659]	cystine arylamidase	+	3.4.11.3
[Ref.: #66659]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66659]	esterase (C 4)	+
[Ref.: #66659]	esterase Lipase (C 8)	+
[Ref.: #66659]	leucine arylamidase	+	3.4.11.1
[Ref.: #66659]	lipase (C 14)	+
[Ref.: #66659]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66659]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66659]	trypsin	-	3.4.21.4
[Ref.: #66659]	urease	-	3.5.1.5
[Ref.: #66659]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66659]	Sample type/isolated from	surface seawater sample
[Ref.: #66659]	Sampling date	2016-02
[Ref.: #66659]	Geographic location (country and/or sea, region)	Ulleung island
[Ref.: #66659]	Country	Republic of Korea
[Ref.: #66659]	Country ISO 3 Code	KOR
[Ref.: #66659]	Continent	Asia
[Ref.: #66659]	Geographic location	37.4707°/130.8840°
[Ref.: #66659]	Enrichment culture	marine agar 2216
[Ref.: #66659]	Enrichment culture duration	1 week
[Ref.: #66659]	Enrichment culture temperature	25 ̊C
[Ref.: #66659]	Isolation/enrichment procedure	dilution-plating technique

[Ref.: #67770]	Sample type/isolated from	Coastal seawater from Ulleung island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ulleung-eup, Ulleung-gun, North Gyeongsang Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66659]	Shewanella sp. strain MMS16-UL482 16S ribosomal RNA gene, partial sequence	KX621128	1392	ENA	2282700 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella litoralis JCM 32306	GCA_014648335	scaffold	GenBank	2282700 tax ID	*
[Ref.: #66792]	Shewanella litoralis JCM 32306	GCA_009828585	scaffold	GenBank	2282700 tax ID	*
[Ref.: #66792]	Shewanella litoralis strain JCM 32306	2282700.8	wgs	PATRIC	2282700 tax ID	*
[Ref.: #66792]	Shewanella litoralis strain JCM 32306	2282700.5	wgs	PATRIC	2282700 tax ID	*
[Ref.: #66792]	Shewanella litoralis JCM 32306	2900453558	draft	JGI IMG/M	2282700 tax ID	*

[Ref.: #66659]

GC-content

43.7 mol%

Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella litoralis JCM 32306 NCBI: GCA_014648335.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella litoralis JCM 32306 NCBI: GCA_014648335.1
[Ref.: #69480]	flagellated	yes	84.982	no
[Ref.: #69480]	gram-positive	no	98.949	yes
[Ref.: #69480]	anaerobic	no	97.549	no
[Ref.: #69480]	aerobic	yes	72.984	yes
[Ref.: #69480]	halophile	no	66.724	no
[Ref.: #69480]	spore-forming	no	96.235	no
[Ref.: #69480]	thermophile	no	99.664	yes
[Ref.: #69480]	glucose-util	yes	83.424	yes
[Ref.: #69480]	motile	yes	91.309	no
[Ref.: #69480]	glucose-ferment	no	84.227	yes

Availability in culture collections External links

[Ref.: #66659]

Culture collection no.

KCTC 62129, JCM 32306

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella saliphila sp. nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater.	Yun BR, Park S, Kim MK, Park J, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002929	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66659

Bo-Ram Yun, Sunjoo Park, Min-Kyeong Kim, Jisun Park, Seung Bum Kim: Shewanella saliphila sp. Nov., Shewanella ulleungensis sp. nov. and Shewanella litoralis sp. nov., isolated from coastal seawater. IJSEM 68: 2960 - 2966 2018 ( DOI 10.1099/ijsem.0.002929 , PubMed 30028285 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Shewanella litoralis JCM 32306

Shewanella litoralis JCM 32306

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