Name: Gomphosphaeria aponina 01 029 clonal
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159666

Type strain:

Species: Gomphosphaeria aponina

Strain Designation: 01 029 clonal

Culture col. no.: DSM 107014, SAG 52.96

Strain history: <- T. Friedl, SAG; {1996} <- E. Kusel-Fetzmann, Universität Wien; {1985}

NCBI tax ID(s): 1521640 (strain), 1521626 (species)

Special Collections

DSMZ

Section

Gomphosphaeria aponina 01 029 clonal is a Gram-negative bacterium that was isolated from benthic on Phragmites.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Cyanobacteriota*
	Class	*Cyanophyceae*
	Order	*Chroococcales*
	Family	*Gomphosphaeriaceae*
	Genus	*Gomphosphaeria*
	Species	**Gomphosphaeria aponina**
	Full Scientific Name (LPSN)	Gomphosphaeria aponina Kützing 1836

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

SSE Schönheiten

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66516]

Culture medium

Z (DSMZ Medium 1726)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66516]			growth	18 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %91

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66516]	Sample type/isolated from	benthic on Phragmites
[Ref.: #66516]	Host species	Phragmites
[Ref.: #66516]	Geographic location (country and/or sea, region)	Burgenland, Neusiedlersee at Illmitz
[Ref.: #66516]	Country	Austria
[Ref.: #66516]	Country ISO 3 Code	AUT
[Ref.: #66516]	Continent	Europe
[Ref.: #66516]	Geographic location	47.9265°/16.8450°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66516]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gomphosphaeria aponina SAG 52.96 = DSM 107014 JP213	GCA_016903655	contig	GenBank ENA	1521640 tax ID	*
[Ref.: #66792]	Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213	1521640.3	wgs	PATRIC	1521640 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213 PATRIC: 1521640.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	91	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213 PATRIC: 1521640.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	80.082	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	57.159	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.147	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	50.249	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.596	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	60.25	no

Availability in culture collections External links

[Ref.: #66516]

Culture collection no.

DSM 107014, SAG 52.96

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Filling the Gaps in the Cyanobacterial Tree of Life-Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014.	Marter P, Huang S, Brinkmann H, Pradella S, Jarek M, Rohde M, Bunk B, Petersen J	Genes (Basel)	10.3390/genes12030389	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66516

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107014

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213

Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213

Change proposal

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