Gomphosphaeria aponina (DSM 107014, SAG 52.96, 01 029 clonal)

Name: Gomphosphaeria aponina (DSM 107014, SAG 52.96, 01 029 clonal)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159666

Type strain

Strain Designation 01 029 clonal

Culture col. no. DSM 107014 SAG 52.96 01 029 clonal

NCBI tax ID(s) 1521640 1521626

Special Collections DSMZ

Links

Gomphosphaeria aponina 01 029 clonal is a psychrophilic prokaryote that was isolated from benthic on Phragmites.

psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 353365

DSM 107014,SAG 52.96

@ref 20215

Last LPSN update 2025-12-16 10:08:19

Domain Bacillati

Phylum Cyanobacteriota

Class Chroococcophyceae

Order Chroococcales

Family Gomphosphaeriaceae

Genus Gomphosphaeria

Species Gomphosphaeria aponina

Full scientific name Gomphosphaeria aponina Kützing 1836

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.1

Multimedia

@ref:	66516
multimedia content:	DSM_107014.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_107014.jpg
caption:	DSM 107014
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66516	CYANOBACTERIA MEDIUM BG11+ (DSMZ Medium 1593)		Medium recipe at MediaDive	Name: CYANOBACTERIA MEDIUM BG11+ (DSMZ Medium 1593) Composition: NaNO3 1.5 g/l K2HPO4 x 3 H2O 0.04 g/l Na2CO3 0.02 g/l Fe(NH4)citrate 0.006 g/l H3BO3 0.0029 g/l MnCl2 x 4 H2O 0.00181 g/l Na2MoO4 x 2 H2O 0.00039 g/l ZnSO4 x 7 H2O 0.00022 g/l Co(NO3)2 x 6 H2O CuSO4 x 5 H2O Mg(SO4) x 7 H2O CaCl2 x 2 H2O Na3-citrate x 2 H2O Na-EDTA x 2 H2O Vitamin B12

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66516	positive	growth	17	psychrophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66516	benthic on Phragmites	Phragmites	Burgenland, Neusiedlersee at Illmitz	Austria	AUT	Europe	47.9265	16.845 47.9265/16.845

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66516	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1690365v1 assembly for Gomphosphaeria aponina SAG 52.96 = DSM 107014	contig	GCA_016903655	1521640.3	1521640	0.61

Genome browser: GCA_016903655

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Gomphosphaeria aponina SAG 52.96 = DSM 107014 16S ribosomal RNA gene, partial sequence.	KM019999	1461		1521640

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gomphosphaeria aponina SAG 52.96 = DSM 107014 JP213
NCBI: GCA_016903655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.40	no
125439	motility	BacteriaNetⓘ	no	75.10	no
125439	gram_stain	BacteriaNetⓘ	negative	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	78.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213
PATRIC: 1521640.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	80.08	no
125438	anaerobic	anaerobicⓘ	no	57.16	no
125438	spore-forming	spore-formingⓘ	no	83.15	no
125438	aerobic	aerobicⓘ	yes	50.25	no
125438	thermophilic	thermophileⓘ	no	90.60	yes
125438	flagellated	motile2+ⓘ	no	60.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Filling the Gaps in the Cyanobacterial Tree of Life-Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014.	Marter P, Huang S, Brinkmann H, Pradella S, Jarek M, Rohde M, Bunk B, Petersen J	Genes (Basel)	10.3390/genes12030389	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66516	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107014
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gomphosphaeria aponina (DSM 107014, SAG 52.96, 01 029 clonal)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016903655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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