Name: Stigonema ocellatum 232
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159665

Type strain:

Species: Stigonema ocellatum

Strain Designation: 232

Culture col. no.: DSM 106950, SAG 48.90, IAM M-252

Strain history: <- T. Friedl, SAG; SAG 48.90 {1988} <- D. Mollenhauer, EAWAG; {1970}

NCBI tax ID(s): 221294 (strain), 221293 (species)

Section

Stigonema ocellatum 232 is a psychrophilic, Gram-negative bacterium that was isolated from Sphagnum bog.

Gram-negative
psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Cyanobacteriota*
	Class	*Cyanophyceae*
	Order	*Nostocales*
	Family	*Stigonemataceae*
	Genus	*Stigonema*
	Species	**Stigonema ocellatum**
	Full Scientific Name (LPSN)	Stigonema ocellatum Thuret ex Bornet and Flahault 1886

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.913

Multimedia content

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Caption:

SAG

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Z 45/4 (DSMZ Medium 1727)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66515]			growth	17 °C

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Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %96.517

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66515]	Sample type/isolated from	Sphagnum bog
[Ref.: #66515]	Geographic location (country and/or sea, region)	Allgäu
[Ref.: #66515]	Country	Germany
[Ref.: #66515]	Country ISO 3 Code	DEU
[Ref.: #66515]	Continent	Europe
[Ref.: #66515]	Geographic location	47.6876°/10.2155°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Wetland (Swamp)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stigonema ocellatum SAG 48.90 = DSM 106950 JP211	GCA_016903675	contig	GenBank	221294 tax ID	*
[Ref.: #66792]	Stigonema ocellatum SAG 48.90 = DSM 106950 strain JP211	221294.3	wgs	PATRIC	221294 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stigonema ocellatum SAG 48.90 = DSM 106950 strain JP211 PATRIC: 221294.3
[Ref.: #69481]	spore-forming	no	76	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stigonema ocellatum SAG 48.90 = DSM 106950 strain JP211 PATRIC: 221294.3
[Ref.: #69480]	motile	no	86.177	no
[Ref.: #69480]	gram-positive	no	92.035	no
[Ref.: #69480]	anaerobic	no	95.207	no
[Ref.: #69480]	aerobic	yes	59.718	no
[Ref.: #69480]	halophile	no	91.941	no
[Ref.: #69480]	spore-forming	no	72.794	no
[Ref.: #69480]	glucose-util	yes	75.201	no
[Ref.: #69480]	thermophile	no	98.18	no
[Ref.: #69480]	flagellated	no	96.019	no
[Ref.: #69480]	glucose-ferment	no	86.67	no

Availability in culture collections External links

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Culture collection no.

DSM 106950, SAG 48.90, IAM M-252

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Filling the Gaps in the Cyanobacterial Tree of Life-Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014.	Marter P, Huang S, Brinkmann H, Pradella S, Jarek M, Rohde M, Bunk B, Petersen J	Genes (Basel)	10.3390/genes12030389	2021	*
Phylogeny	Heterocyte glycolipids indicate polyphyly of stigonematalean cyanobacteria.	Bauersachs T, Miller SR, Gugger M, Mudimu O, Friedl T, Schwark L	Phytochemistry	10.1016/j.phytochem.2019.112059	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66515

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106950

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Stigonema ocellatum SAG 48.90 = DSM 106950 strain JP211

Stigonema ocellatum SAG 48.90 = DSM 106950 strain JP211

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