Archive BacDiveID:10.13145/bacdive159666.20240916.9.1

Strain identifier

BacDive ID: 159666

Type strain:

Species: Gomphosphaeria aponina

Strain Designation: 01 029 clonal

Strain history: <- T. Friedl, SAG; {1996} <- E. Kusel-Fetzmann, Universität Wien; {1985}

NCBI tax ID(s): 1521640 (strain), 1521626 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 66516

BacDive-ID: 159666

DSM-Number: 107014

keywords: genome sequence, Bacteria, Gram-negative

description: Gomphosphaeria aponina 01 029 clonal is a Gram-negative bacterium that was isolated from benthic on Phragmites.

NCBI tax id

NCBI tax id	Matching level
1521640	strain
1521626	species

strain history

@ref: 66516
history: <- T. Friedl, SAG; {1996} <- E. Kusel-Fetzmann, Universität Wien; {1985}

doi: 10.13145/bacdive159666.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/cyanobacteriota
domain: Bacteria
phylum: Cyanobacteriota
class: Cyanophyceae
order: Chroococcales
family: Gomphosphaeriaceae
genus: Gomphosphaeria
species: Gomphosphaeria aponina
full scientific name: Gomphosphaeria aponina Kützing 1836

@ref: 66516

domain: Bacteria

phylum: Cyanobacteria

class: Cyanophyceae

order: Chroococcales

family: Gomphosphaeriaceae

genus: Gomphosphaeria

species: Gomphosphaeria aponina

full scientific name: Gomphosphaeria aponina

strain designation: 01 029 clonal

type strain: no

Morphology

multimedia

@ref: 66516
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_107014.jpg
caption: SSE Schönheiten
intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

@ref: 66516
name: Z (DSMZ Medium 1726)
growth: yes
link: https://mediadive.dsmz.de/medium/1726
composition: Name: Z Cyanomedium (DSMZ Medium 1726) Composition: NaNO3 0.467 g/l Ca(NO3)2 x 4 H2O 0.059 g/l K2HPO4 0.031 g/l MgSO4 x 7 H2O 0.025 g/l Na2CO3 0.021 g/l Na-EDTA 0.00372 g/l FeCl3 x 6 H2O 0.0027 g/l H3BO3 0.000248 g/l MnSO4 x H2O 0.0001784 g/l AlK(SO4)2 x 12 H2O 3.792e-05 g/l ZnSO4 x 7 H2O 2.296e-05 g/l (NH4)2Ni(SO4)2 x 6 H2O 1.584e-05 g/l Cd(NO3)2 x 4 H2O 1.232e-05 g/l Co(NO3)2 x 6 H2O 1.168e-05 g/l CuSO4 x 5 H2O 1e-05 g/l KBr 9.52e-06 g/l (NH4)6Mo7O24 x 4 H2O 7.04e-06 g/l KJ 6.64e-06 g/l Cr(NO3)3 x 7 H2O 2.96e-06 g/l Na2WO4 x 2 H2O 2.64e-06 g/l VOSO4 x 2 H2O 1.6e-06 g/l Distilled water

culture temp

@ref: 66516
growth: positive
type: growth
temperature: 18

Physiology and metabolism

spore formation

@ref: 69481
spore formation: no
confidence: 91

Isolation, sampling and environmental information

isolation

@ref: 66516
sample type: benthic on Phragmites
host species: Phragmites
geographic location: Burgenland, Neusiedlersee at Illmitz
country: Austria
origin.country: AUT
continent: Europe
latitude: 47.9265
longitude: 16.845

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Aquatic	#Sediment

Safety information

risk assessment

@ref: 66516
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Gomphosphaeria aponina SAG 52.96 = DSM 107014 JP213	GCA_016903655	contig	ncbi	1521640
66792	Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213	1521640.3	wgs	patric	1521640

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69481	spore-forming	spore-forming	Ability to form endo- or exospores	no	91	no
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	no	80.082	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	57.159	no
69480	spore-forming	spore-forming	Ability to form endo- or exospores	no	83.147	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	50.249	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	90.596	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	60.25	no

External links

@ref: 66516

culture collection no.: DSM 107014, SAG 52.96

literature

topic: Genetics
Pubmed-ID: 33803228
title: Filling the Gaps in the Cyanobacterial Tree of Life-Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014.
authors: Marter P, Huang S, Brinkmann H, Pradella S, Jarek M, Rohde M, Bunk B, Petersen J
journal: Genes (Basel)
DOI: 10.3390/genes12030389
year: 2021
mesh: Cyanobacteria/*genetics, Genome, Bacterial/genetics, Metagenome/*genetics, Metagenomics/methods, Microbiota/genetics, Phylogeny
topic2: Phylogeny

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
66516	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-107014	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107014)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1