Strain identifier
BacDive ID: 159666
Type strain: 
Species: Gomphosphaeria aponina
Strain Designation: 01 029 clonal
Strain history: <- T. Friedl, SAG; {1996} <- E. Kusel-Fetzmann, Universität Wien; {1985}
NCBI tax ID(s): 1521640 (strain), 1521626 (species)
version 8.1 (current version)
General
@ref: 66516
BacDive-ID: 159666
DSM-Number: 107014
keywords: genome sequence, Bacteria, psychrophilic, Gram-negative
description: Gomphosphaeria aponina 01 029 clonal is a psychrophilic, Gram-negative bacterium that was isolated from benthic on Phragmites.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1521640 | strain |
| 1521626 | species |
strain history
- @ref: 66516
- history: <- T. Friedl, SAG; {1996} <- E. Kusel-Fetzmann, Universität Wien; {1985}
doi: 10.13145/bacdive159666.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/cyanobacteriota
- domain: Bacteria
- phylum: Cyanobacteriota
- class: Cyanophyceae
- order: Chroococcales
- family: Gomphosphaeriaceae
- genus: Gomphosphaeria
- species: Gomphosphaeria aponina
- full scientific name: Gomphosphaeria aponina Kützing 1836
@ref: 66516
domain: Bacteria
phylum: Cyanobacteria
class: Cyanophyceae
order: Chroococcales
family: Gomphosphaeriaceae
genus: Gomphosphaeria
species: Gomphosphaeria aponina
full scientific name: Gomphosphaeria aponina
strain designation: 01 029 clonal
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.972
multimedia
- @ref: 66516
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_107014.jpg
- caption: SSE Schönheiten
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 66516
- name: Z (DSMZ Medium 1726)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1726
- composition: Name: Z Cyanomedium (DSMZ Medium 1726) Composition: NaNO3 0.467 g/l Ca(NO3)2 x 4 H2O 0.059 g/l K2HPO4 0.031 g/l MgSO4 x 7 H2O 0.025 g/l Na2CO3 0.021 g/l Na-EDTA 0.00372 g/l FeCl3 x 6 H2O 0.0027 g/l H3BO3 0.000248 g/l MnSO4 x H2O 0.0001784 g/l AlK(SO4)2 x 12 H2O 3.792e-05 g/l ZnSO4 x 7 H2O 2.296e-05 g/l (NH4)2Ni(SO4)2 x 6 H2O 1.584e-05 g/l Cd(NO3)2 x 4 H2O 1.232e-05 g/l Co(NO3)2 x 6 H2O 1.168e-05 g/l CuSO4 x 5 H2O 1e-05 g/l KBr 9.52e-06 g/l (NH4)6Mo7O24 x 4 H2O 7.04e-06 g/l KJ 6.64e-06 g/l Cr(NO3)3 x 7 H2O 2.96e-06 g/l Na2WO4 x 2 H2O 2.64e-06 g/l VOSO4 x 2 H2O 1.6e-06 g/l Distilled water
culture temp
- @ref: 66516
- growth: positive
- type: growth
- temperature: 18
- range: psychrophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.896 |
| 69481 | no | 91 |
Isolation, sampling and environmental information
isolation
- @ref: 66516
- sample type: benthic on Phragmites
- host species: Phragmites
- geographic location: Burgenland, Neusiedlersee at Illmitz
- country: Austria
- origin.country: AUT
- continent: Europe
- latitude: 47.9265
- longitude: 16.845
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 66516
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gomphosphaeria aponina SAG 52.96 = DSM 107014 JP213 | GCA_016903655 | contig | ncbi | 1521640 |
| 66792 | Gomphosphaeria aponina SAG 52.96 = DSM 107014 strain JP213 | 1521640.3 | wgs | patric | 1521640 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 91 | no |
| motile | no | 87.127 | no |
| gram-positive | no | 94.886 | no |
| anaerobic | no | 86.926 | no |
| aerobic | yes | 67.119 | no |
| halophile | no | 79.803 | no |
| spore-forming | no | 84.386 | no |
| glucose-util | yes | 74.032 | no |
| flagellated | no | 96.106 | no |
| thermophile | no | 99.216 | no |
| glucose-ferment | no | 79.162 | no |
External links
@ref: 66516
culture collection no.: DSM 107014, SAG 52.96
literature
- topic: Genetics
- Pubmed-ID: 33803228
- title: Filling the Gaps in the Cyanobacterial Tree of Life-Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014.
- authors: Marter P, Huang S, Brinkmann H, Pradella S, Jarek M, Rohde M, Bunk B, Petersen J
- journal: Genes (Basel)
- DOI: 10.3390/genes12030389
- year: 2021
- mesh: Cyanobacteria/*genetics, Genome, Bacterial/genetics, Metagenome/*genetics, Metagenomics/methods, Microbiota/genetics, Phylogeny
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66516 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107014 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107014) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |