Bifidobacterium tsurumiense (DSM 104387, BSM-380-WT-2B)

Name: Bifidobacterium tsurumiense (DSM 104387, BSM-380-WT-2B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159544

Type strain

Strain Designation BSM-380-WT-2B

Culture col. no. DSM 104387 BSM-380-WT-2B

NCBI tax ID(s) 356829

Special Collections DSMZ Pig DZIF

History <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; BSM-380-WT-2B

Links

Bifidobacterium tsurumiense BSM-380-WT-2B is a bacterium that was isolated from feces; pig, 8 weeks old, wild type.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401735

DSM 104387

@ref 20215

Last LPSN update 2026-02-09 11:38:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium tsurumiense

Full scientific name Bifidobacterium tsurumiense Okamoto et al. 2008

BacDive ID	Other strains from **Bifidobacterium tsurumiense** (3)	Type strain
1740	B. tsurumiense OMB 115, DSM 17777, JCM 13495 (type strain)
1741	B. tsurumiense OMB 118, DSM 17778, JCM 13496
1742	B. tsurumiense OMB 120, DSM 17779, JCM 13497

Morphology

Cell morphology

@ref	Motility	Confidence
125438		95

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66370	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
66370	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
66370	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.8

Spore formation

@ref	Spore formation	Confidence
125438		90.935

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66370	feces; pig, 8 weeks old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537465 (>99% sequence identity) for Bifidobacterium tsurumiense subclade from Microbeatlas

Aquatic Samples	80
Soil Samples	69
Animal Samples	11512
Plant Samples	26
Total Samples	11687

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66370	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM969650v1 assembly for Bifidobacterium tsurumiense BSM-380-WT-2B	contig	GCA_009696505	356829.8	356829	75.53

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66370	Bifidobacterium tsurumiense strain DSM 104387 16S ribosomal RNA gene, partial sequence	MN537465	1488		356829

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium tsurumiense BSM-380-WT-2B
NCBI: GCA_009696505

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	77.70	no
125439	motility	BacteriaNetⓘ	yes	75.90	no
125439	gram_stain	BacteriaNetⓘ	positive	65.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium tsurumiense strain BSM-380-WT-2B
PATRIC: 356829.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.25	no
125438	anaerobic	anaerobicⓘ	yes	77.32	no
125438	spore-forming	spore-formingⓘ	no	90.94	no
125438	aerobic	aerobicⓘ	no	92.50	no
125438	thermophilic	thermophileⓘ	no	90.99	yes
125438	flagellated	motile2+ⓘ	no	95.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66370	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104387
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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