Bifidobacterium tsurumiense (DSM 17777, JCM 13495, OMB 115)

Name: Bifidobacterium tsurumiense (DSM 17777, JCM 13495, OMB 115)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1740

Type strain

Strain Designation OMB 115

Culture col. no. DSM 17777 JCM 13495 OMB 115

NCBI tax ID(s) 1121112 356829

Special Collections DSMZ JCM Literature strains

History <- Masaaki Okamoto; OMB115 M. Okamoto OMB 115.

Links

Bifidobacterium tsurumiense OMB 115 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from hamster, dental plaque.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 323952

DSM 17777,JCM 13495,LMG 25665

@ref 20215

Last LPSN update 2026-02-09 11:18:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium tsurumiense

Full scientific name Bifidobacterium tsurumiense Okamoto et al. 2008

BacDive ID	Other strains from **Bifidobacterium tsurumiense** (3)	Type strain
1741	B. tsurumiense OMB 118, DSM 17778, JCM 13496
1742	B. tsurumiense OMB 120, DSM 17779, JCM 13497
159544	B. tsurumiense BSM-380-WT-2B, DSM 104387

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
23154	positive	rod-shaped
125438				95.5

Colony morphology

@ref	Colony color	Incubation period	Medium used
23154	white	1 day	Brucella HK blood agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7181	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
23154	Brucella HK blood agar

Culture temp

@ref	Growth	Type	Temperature (°C)
7181	positive	growth	37
23154	positive	growth	25-45
23154	positive	optimum	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7181	anaerobe
23154	facultative anaerobe
125439	obligate aerobe	96.3

Spore formation

@ref	Spore formation	Confidence
125439		93.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23154	16808 ChEBI	2-dehydro-D-gluconate	+	builds acid from
23154	30916 ChEBI	2-oxoglutarate	+	fermentation
23154		3-O-methyl alpha-D-glucopyranoside	+	fermentation
23154	27613 ChEBI	amygdalin	+	builds acid from
23154	27613 ChEBI	amygdalin	+	fermentation
23154	18305 ChEBI	arbutin	+	builds acid from
23154	18305 ChEBI	arbutin	+	fermentation
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
23154	17057 ChEBI	cellobiose	+	builds acid from
23154	17057 ChEBI	cellobiose	+	fermentation
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
23154	17108 ChEBI	D-arabinose	-	fermentation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23154	18333 ChEBI	D-arabitol	-	fermentation
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
23154	15824 ChEBI	D-fructose	+	fermentation
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
23154	28847 ChEBI	D-fucose	-	fermentation
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
23154	12936 ChEBI	D-galactose	+	fermentation
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
23154	17634 ChEBI	D-glucose	+	fermentation
23154	62318 ChEBI	D-lyxose	-	fermentation
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
23154	16899 ChEBI	D-mannitol	+	fermentation
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
23154	16024 ChEBI	D-mannose	+	builds acid from
23154	16024 ChEBI	D-mannose	+	fermentation
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
23154	16988 ChEBI	D-ribose	+	fermentation
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
23154	17924 ChEBI	D-sorbitol	-	fermentation
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
23154	16443 ChEBI	D-tagatose	-	fermentation
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23154	65327 ChEBI	D-xylose	+	fermentation
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
23154	17113 ChEBI	erythritol	-	fermentation
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23154	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
23154	16813 ChEBI	galactitol	-	fermentation
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23154	28066 ChEBI	gentiobiose	+	builds acid from
23154	28066 ChEBI	gentiobiose	+	fermentation
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
23154	24265 ChEBI	gluconate	+	fermentation
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
23154	17754 ChEBI	glycerol	-	fermentation
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
23154	28087 ChEBI	glycogen	+	builds acid from
23154	28087 ChEBI	glycogen	+	fermentation
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
23154	15443 ChEBI	inulin	-	fermentation
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23154	30849 ChEBI	L-arabinose	+	fermentation
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
23154	18403 ChEBI	L-arabitol	-	fermentation
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23154	18287 ChEBI	L-fucose	-	fermentation
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
23154	62345 ChEBI	L-rhamnose	-	fermentation
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
23154	17266 ChEBI	L-sorbose	-	fermentation
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
23154	65328 ChEBI	L-xylose	-	fermentation
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23154	17716 ChEBI	lactose	+	builds acid from
23154	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
23154	17306 ChEBI	maltose	+	fermentation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23154	6731 ChEBI	melezitose	-	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23154	28053 ChEBI	melibiose	+	fermentation
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
23154	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
23154	43943 ChEBI	methyl alpha-D-mannoside	-	fermentation
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
23154	74863 ChEBI	methyl beta-D-xylopyranoside	-	fermentation
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
23154	17268 ChEBI	myo-inositol	-	fermentation
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
23154	506227 ChEBI	N-acetylglucosamine	-	fermentation
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23154	16634 ChEBI	raffinose	+	fermentation
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
23154	15963 ChEBI	ribitol	-	fermentation
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23154	17814 ChEBI	salicin	+	fermentation
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
23154	28017 ChEBI	starch	+	builds acid from
23154	28017 ChEBI	starch	+	fermentation
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
23154	17992 ChEBI	sucrose	+	fermentation
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
23154	27082 ChEBI	trehalose	+	builds acid from
23154	27082 ChEBI	trehalose	+	fermentation
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
23154	27897 ChEBI	tryptophan	-	energy source
23154	32528 ChEBI	turanose	+	builds acid from
23154	32528 ChEBI	turanose	+	fermentation
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
23154	17151 ChEBI	xylitol	-	fermentation
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23154	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
23154	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
23154	6-phospho-beta-galactosidase	-	3.2.1.85
23154	acid phosphatase	+	3.1.3.2
23154	alanine arylamidase	+	3.4.11.2
23154	alkaline phosphatase	-	3.1.3.1
23154	alpha-arabinosidase	+	3.2.1.55
23154	alpha-fucosidase	-	3.2.1.51
23154	alpha-galactosidase	+	3.2.1.22
23154	alpha-glucosidase	+	3.2.1.20
23154	alpha-mannosidase	-	3.2.1.24
23154	arginine dihydrolase	-	3.5.3.6
23154	beta-galactosidase	+	3.2.1.23
23154	beta-glucosidase	+	3.2.1.21
23154	beta-glucuronidase	-	3.2.1.31
23154	catalase	-	1.11.1.6
23154	chymotrypsin	-	3.4.4.5
23154	cystine arylamidase	+	3.4.11.3
23154	cytochrome oxidase	-	1.9.3.1
23154	esterase	+
23154	esterase lipase (C 8)	+
23154	glutamate decarboxylase	-	4.1.1.15
23154	glutamyl-glutamate arylamidase	-
23154	glycin arylamidase	+
23154	histidine arylamidase	+
23154	L-arginine arylamidase	+
23154	leucine arylamidase	+	3.4.11.1
23154	leucyl glycin arylamidase	+	3.4.11.1
23154	lipase	+
23154	N-acetyl-beta-glucosaminidase	-	3.2.1.52
23154	nitrate reductase	-	1.7.99.4
23154	phenylalanine deaminase	+	4.3.1.5
23154	phosphoamidase	-	3.9.1.1
23154	proline-arylamidase	+	3.4.11.5
23154	pyroglutamic acid arylamidase	-
23154	serine arylamidase	+
23154	trypsin	-	3.4.21.4
23154	tryptophan deaminase	-	4.1.99.1
23154	tyrosine arylamidase	+
23154	urease	-	3.5.1.5
23154	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	pentose phosphate pathway	100	11 of 11
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	ribulose monophosphate pathway	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	photosynthesis	85.71	12 of 14
66794	glycogen metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	NAD metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	purine metabolism	63.83	60 of 94
66794	d-xylose degradation	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	degradation of pentoses	60.71	17 of 28
66794	oxidative phosphorylation	59.34	54 of 91
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	pyrimidine metabolism	55.56	25 of 45
66794	histidine metabolism	55.17	16 of 29
66794	metabolism of disaccharids	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	non-pathway related	52.63	20 of 38
66794	alanine metabolism	51.72	15 of 29
66794	CMP-KDO biosynthesis	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	Entner Doudoroff pathway	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	citric acid cycle	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	proline metabolism	45.45	5 of 11
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	glutamate and glutamine metabolism	42.86	12 of 28
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	tryptophan metabolism	42.11	16 of 38
66794	lipid metabolism	41.94	13 of 31
66794	arginine metabolism	41.67	10 of 24
66794	lysine metabolism	40.48	17 of 42
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	urea cycle	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	tyrosine metabolism	35.71	5 of 14
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	flavin biosynthesis	33.33	5 of 15
66794	ascorbate metabolism	31.82	7 of 22
66794	propionate fermentation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
7181	-	-	-	-	+	+	+	-	-	-	+	+/-	+	-	-	-	-	-	+	-	-	-	-	+/-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	+	-	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7181	hamster, dental plaque	Japan	JPN	Asia
23154	dental plaque from golden hamsters fed with a high-carbohydrate diet
67770	Dental plaque from hamster fed with a high-carbohydrate diet

Taxonmaps

69479

Global distribution of 16S sequence LC258148 (>99% sequence identity) for Bifidobacterium tsurumiense subclade from Microbeatlas

Aquatic Samples	80
Soil Samples	69
Animal Samples	11512
Plant Samples	26
Total Samples	11687

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7181	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42974v1 assembly for Bifidobacterium tsurumiense DSM 17777	scaffold	GCA_000429745	1121112.3	2524023141	1121112	73.15
67770	Biftsu assembly for Bifidobacterium tsurumiense JCM 13495	contig	GCA_000741765	356829.3	2597490257	356829	72.44
67770	DSM-17777 assembly for Bifidobacterium tsurumiense DSM 17777	contig	GCA_000771065	1121112.4	2663763500	1121112	69.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7181	Bifidobacterium tsurumiense gene for 16S ribosomal RNA, partial sequence, strain: OMB115	AB241106	1449		356829
67770	Bifidobacterium tsurumiense gene for 16S ribosomal RNA, partial sequence, strain: JCM 13495	LC258148	1472		356829

GC content

@ref	GC-content (mol%)	Method
7181	53
23154	53.0	high performance liquid chromatography (HPLC)
67770	53	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium tsurumiense DSM 17777
NCBI: GCA_000429745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no
125439	gram_stain	BacteriaNetⓘ	negative	86.30	no
125439	motility	BacteriaNetⓘ	yes	59.80	no
125439	spore_formation	BacteriaNetⓘ	no	93.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium tsurumiense DSM 17777
PATRIC: 1121112.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.42	yes
125438	anaerobic	anaerobicⓘ	yes	77.70	no
125438	spore-forming	spore-formingⓘ	no	89.77	no
125438	aerobic	aerobicⓘ	no	93.57	yes
125438	thermophilic	thermophileⓘ	no	90.99	yes
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biogas digestate as a sustainable phytosterol source for biotechnological cascade valorization.	Weckerle T, Ewald H, Guth P, Knorr KH, Philipp B, Holert J.	Microb Biotechnol	10.1111/1751-7915.14174	2023
Metabolism	Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.	Tiirola MA, Wang H, Paulin L, Kulomaa MS.	Appl Environ Microbiol	10.1128/aem.68.9.4495-4501.2002	2002
Phylogeny	Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.	Brandt K, Barrangou R.	Front Microbiol	10.3389/fmicb.2016.00657	2016
Phylogeny	Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.	Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02004-14	2014
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Phylogeny	Sphingobium cupriresistens sp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genus Sphingobium.	Li L, Liu H, Shi Z, Wang G.	Int J Syst Evol Microbiol	10.1099/ijs.0.040865-0	2013
Phylogeny	Sphingobium limneticum sp. nov. and Sphingobium boeckii sp. nov., two freshwater planktonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov.	Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Sproer C, Overmann J.	Int J Syst Evol Microbiol	10.1099/ijs.0.040105-0	2013
Phylogeny	Bifidobacterium tsurumiense sp. nov., from hamster dental plaque.	Okamoto M, Benno Y, Leung KP, Maeda N	Int J Syst Evol Microbiol	10.1099/ijs.0.65296-0	2008

References

#7181	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17777
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23154	Masaaki Okamoto, Yoshimi Benno, Kai-P Leung, Nobuko Maeda: Bifidobacterium tsurumiense sp. nov., from hamster dental plaque. IJSEM 58: 144 - 148 2008 ( DOI 10.1099/ijs.0.65296-0 , PubMed 18175700 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium tsurumiense (DSM 17777, JCM 13495, OMB 115)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000429745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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