Name: Bifidobacterium tsurumiense OMB 115
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1740

Type strain:

Species: Bifidobacterium tsurumiense

Strain Designation: OMB 115

Culture col. no.: DSM 17777, JCM 13495

Strain history: M. Okamoto OMB 115.

NCBI tax ID(s): 1121112 (strain), 356829 (species)

SI-ID 323952

DSM 17777, JCM 13495, LMG 25665

Other strains from Bifidobacterium tsurumiense

B. tsurumiense OMB 118, DSM 17778, JCM 13496
B. tsurumiense OMB 120, DSM 17779, JCM 13497
B. tsurumiense BSM-380-WT-2B, DSM 104387

Section

Bifidobacterium tsurumiense OMB 115 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from hamster, dental plaque.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium tsurumiense**
	Full Scientific Name (LPSN)	Bifidobacterium tsurumiense Okamoto et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #23154]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23154]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %94.063

[Ref.: #23154]	Colony color	white
[Ref.: #23154]	Incubation period	1 day
[Ref.: #23154]	Cultivation medium used	Brucella HK blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7181]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #7181]

Culture medium growth

[Ref.: #7181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7181]

Culture medium composition

expand / minimize

[Ref.: #23154]

Culture medium

Brucella HK blood agar

[Ref.: #23154]

Culture medium growth

		Temperature
[Ref.: #7181]	growth	37 °C
[Ref.: #23154]	growth	25-45 °C
[Ref.: #23154]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7181]	Temperature range	mesophilic
[Ref.: #23154]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7181]	Oxygen tolerance	anaerobe
[Ref.: #23154]	Oxygen tolerance	facultative anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.519

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23154]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #23154]	2-oxoglutarate ChEBI	+	fermentation
[Ref.: #23154]	3-O-methyl alpha-D-glucopyranoside	+	fermentation
[Ref.: #23154]	amygdalin ChEBI	+	builds acid from
[Ref.: #23154]	amygdalin ChEBI	+	fermentation
[Ref.: #23154]	arbutin ChEBI	+	builds acid from
[Ref.: #23154]	arbutin ChEBI	+	fermentation
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	cellobiose ChEBI	+	builds acid from
[Ref.: #23154]	cellobiose ChEBI	+	fermentation
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-arabinose ChEBI	-	fermentation
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-arabitol ChEBI	-	fermentation
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-fructose ChEBI	+	fermentation
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-fucose ChEBI	-	fermentation
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-galactose ChEBI	+	fermentation
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-glucose ChEBI	+	fermentation
[Ref.: #23154]	D-lyxose ChEBI	-	fermentation
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-mannitol ChEBI	+	fermentation
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-mannose ChEBI	+	builds acid from
[Ref.: #23154]	D-mannose ChEBI	+	fermentation
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-ribose ChEBI	+	fermentation
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-sorbitol ChEBI	-	fermentation
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-tagatose ChEBI	-	fermentation
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	D-xylose ChEBI	+	fermentation
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	erythritol ChEBI	-	fermentation
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	galactitol ChEBI	-	fermentation
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	gentiobiose ChEBI	+	builds acid from
[Ref.: #23154]	gentiobiose ChEBI	+	fermentation
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	gluconate ChEBI	+	fermentation
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	glycerol ChEBI	-	fermentation
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	glycogen ChEBI	+	builds acid from
[Ref.: #23154]	glycogen ChEBI	+	fermentation
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	inulin ChEBI	-	fermentation
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-arabinose ChEBI	+	fermentation
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-arabitol ChEBI	-	fermentation
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-fucose ChEBI	-	fermentation
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-rhamnose ChEBI	-	fermentation
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-sorbose ChEBI	-	fermentation
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	L-xylose ChEBI	-	fermentation
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	lactose ChEBI	+	builds acid from
[Ref.: #23154]	lactose ChEBI	+	fermentation
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	maltose ChEBI	+	fermentation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	melezitose ChEBI	-	fermentation
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	melibiose ChEBI	+	fermentation
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	methyl alpha-D-mannoside ChEBI	-	fermentation
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	methyl beta-D-xylopyranoside ChEBI	-	fermentation
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	myo-inositol ChEBI	-	fermentation
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	N-acetylglucosamine ChEBI	-	fermentation
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	raffinose ChEBI	+	fermentation
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	ribitol ChEBI	-	fermentation
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	salicin ChEBI	+	fermentation
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	starch ChEBI	+	builds acid from
[Ref.: #23154]	starch ChEBI	+	fermentation
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	sucrose ChEBI	+	fermentation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23154]	trehalose ChEBI	+	builds acid from
[Ref.: #23154]	trehalose ChEBI	+	fermentation
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	tryptophan ChEBI	-	energy source
[Ref.: #23154]	turanose ChEBI	+	builds acid from
[Ref.: #23154]	turanose ChEBI	+	fermentation
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23154]	xylitol ChEBI	-	fermentation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23154]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #23154]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #23154]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #23154]	acid phosphatase	+	3.1.3.2
[Ref.: #23154]	alanine arylamidase	+	3.4.11.2
[Ref.: #23154]	alkaline phosphatase	-	3.1.3.1
[Ref.: #23154]	alpha-arabinosidase	+	3.2.1.55
[Ref.: #23154]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23154]	alpha-galactosidase	+	3.2.1.22
[Ref.: #23154]	alpha-glucosidase	+	3.2.1.20
[Ref.: #23154]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23154]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23154]	beta-galactosidase	+	3.2.1.23
[Ref.: #23154]	beta-glucosidase	+	3.2.1.21
[Ref.: #23154]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23154]	catalase	-	1.11.1.6
[Ref.: #23154]	chymotrypsin	-	3.4.4.5
[Ref.: #23154]	cystine arylamidase	+	3.4.11.3
[Ref.: #23154]	cytochrome oxidase	-	1.9.3.1
[Ref.: #23154]	esterase	+
[Ref.: #23154]	esterase lipase (C 8)	+
[Ref.: #23154]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #23154]	glutamyl-glutamate arylamidase	-
[Ref.: #23154]	glycin arylamidase	+
[Ref.: #23154]	histidine arylamidase	+
[Ref.: #23154]	L-arginine arylamidase	+
[Ref.: #23154]	leucine arylamidase	+	3.4.11.1
[Ref.: #23154]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #23154]	lipase	+
[Ref.: #23154]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23154]	nitrate reductase	-	1.7.99.4
[Ref.: #23154]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #23154]	phosphoamidase	-	3.9.1.1
[Ref.: #23154]	proline-arylamidase	+	3.4.11.5
[Ref.: #23154]	pyroglutamic acid arylamidase	-
[Ref.: #23154]	serine arylamidase	+
[Ref.: #23154]	trypsin	-	3.4.21.4
[Ref.: #23154]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23154]	tyrosine arylamidase	+
[Ref.: #23154]	urease	-	3.5.1.5
[Ref.: #23154]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #7181]	14368	-	-	-	-	+	+	+	-	-	-	+	+/-	+	-	-	-	-	-	+	-	-	-	-	+/-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	+	-	-	-	-	-	-	-	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	palmitate biosynthesis	86.36	19 of 22
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	purine metabolism	63.83	60 of 94
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	pyrimidine metabolism	55.56	25 of 45
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	alanine metabolism	51.72	15 of 29
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	42.86	12 of 28
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	tryptophan metabolism	42.11	16 of 38
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	arginine metabolism	41.67	10 of 24
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	flavin biosynthesis	33.33	5 of 15
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7181]	Sample type/isolated from	hamster, dental plaque
[Ref.: #7181]	Country	Japan
[Ref.: #7181]	Country ISO 3 Code	JPN
[Ref.: #7181]	Continent	Asia

[Ref.: #23154]	Sample type/isolated from	dental plaque from golden hamsters fed with a high-carbohydrate diet

[Ref.: #67770]	Sample type/isolated from	Dental plaque from hamster fed with a high-carbohydrate diet
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Plaque
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body Product	#Oral cavity and Airways	#Dental plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC258148 (>99% sequence identity) for Bifidobacterium tsurumiense subclade from Microbeatlas

Aquatic Samples	80
Soil Samples	69
Animal Samples	11512
Plant Samples	26
Total Samples	11687

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7181]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7181]	Bifidobacterium tsurumiense gene for 16S ribosomal RNA, partial sequence, strain: OMB115	AB241106	1449	ENA	356829 tax ID
[Ref.: #67770]	Bifidobacterium tsurumiense gene for 16S ribosomal RNA, partial sequence, strain: JCM 13495	LC258148	1472	ENA	356829 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium tsurumiense DSM 17777	GCA_000771065	contig	GenBank	1121112 tax ID
[Ref.: #67770]	Bifidobacterium tsurumiense JCM 13495	GCA_000741765	contig	GenBank	356829 tax ID
[Ref.: #67770]	Bifidobacterium tsurumiense DSM 17777	GCA_000429745	scaffold	GenBank	1121112 tax ID
[Ref.: #66792]	Bifidobacterium tsurumiense strain JCM 13495	356829.3	wgs	PATRIC	356829 tax ID	*
[Ref.: #66792]	Bifidobacterium tsurumiense DSM 17777	2663763500	draft	JGI IMG/M	1121112 tax ID	*
[Ref.: #66792]	Bifidobacterium tsurumiense DSM 17777	2524023141	draft	JGI IMG/M	1121112 tax ID	*

[Ref.: #7181]	GC-content	53 mol%
[Ref.: #23154]	GC-content	53.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	53 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium tsurumiense DSM 17777 DSM 17777 NCBI: GCA_000429745.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium tsurumiense DSM 17777 PATRIC: 1121112.3
[Ref.: #69480]	motile	no	95.73	no
[Ref.: #69480]	flagellated	no	97.132	no
[Ref.: #69480]	gram-positive	yes	93.665	yes
[Ref.: #69480]	anaerobic	yes	97.909	no
[Ref.: #69480]	aerobic	no	97.649	yes
[Ref.: #69480]	halophile	no	62.091	no
[Ref.: #69480]	spore-forming	no	96.098	no
[Ref.: #69480]	thermophile	no	96.936	yes
[Ref.: #69480]	glucose-util	yes	88.618	no
[Ref.: #69480]	glucose-ferment	yes	85.479	no

Availability in culture collections External links

[Ref.: #7181]

Culture collection no.

DSM 17777, JCM 13495

[Ref.: #71387]

SI-ID 323952

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bifidobacterium tsurumiense sp. nov., from hamster dental plaque.	Okamoto M, Benno Y, Leung KP, Maeda N	Int J Syst Evol Microbiol	10.1099/ijs.0.65296-0	2008	*

References

#7181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17777

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23154

Masaaki Okamoto, Yoshimi Benno, Kai-P Leung, Nobuko Maeda: Bifidobacterium tsurumiense sp. nov., from hamster dental plaque. IJSEM 58: 144 - 148 2008 ( DOI 10.1099/ijs.0.65296-0 , PubMed 18175700 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71387

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323952.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium tsurumiense DSM 17777 DSM 17777

Bifidobacterium tsurumiense DSM 17777

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