Parabacteroides distasonis (DSM 106899, WCA3-693-APC-2H)

Name: Parabacteroides distasonis (DSM 106899, WCA3-693-APC-2H)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158876

Type strain

Strain Designation WCA3-693-APC-2H

Culture col. no. DSM 106899 WCA3-693-APC-2H

NCBI tax ID(s) 823

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-2H

Links

Parabacteroides distasonis WCA3-693-APC-2H is a bacterium that was isolated from feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403847

DSM 106899

@ref 20215

Last LPSN update 2026-05-29 08:44:03

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Tannerellaceae

Genus Parabacteroides

Species Parabacteroides distasonis

Full scientific name Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006

Synonyms (1)

Bacteroides distasonis

BacDive ID	Other strains from **Parabacteroides distasonis** (17)	Type strain
12497	P. distasonis 10159, CIP 104284, DSM 20701, ATCC 8503, ... (type strain)
130882	P. distasonis SAB-131-CoC-3, DSM 29491
152089	P. distasonis CCUG 45716
156806	P. distasonis CCUG 65470
156930	P. distasonis CCUG 67118
157009	P. distasonis CCUG 68616
158877	P. distasonis H6_9, DSM 108211
158878	P. distasonis H1_7, DSM 108218
159982	P. distasonis APCS2/PD, DSM 112022
161283	P. distasonis JCM 1294
161351	P. distasonis JCM 13400
161352	P. distasonis JCM 13401
161353	P. distasonis JCM 13402
161354	P. distasonis JCM 13403
161355	P. distasonis JCM 13404
169198	P. distasonis 31/2, DSM 24965, BEI HM-169
169199	P. distasonis Cla-AP-4, DSM 111137

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	92.271
125439	negative	90.576

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65698	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
65698	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
65698	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	98.33

Spore formation

@ref	Spore formation	Confidence
125439		99.611

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65698	feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537523 (>99% sequence identity) for Parabacteroides distasonis subclade from Microbeatlas

Aquatic Samples	390
Soil Samples	88
Animal Samples	38024
Plant Samples	40
Total Samples	38542

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65698	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284346v1 assembly for Parabacteroides distasonis WCA3-693-APC-2H	contig	GCA_012843465	823.3403	823	71.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65698	Parabacteroides distasonis strain DSM 106899 16S ribosomal RNA gene, partial sequence	MN537523	1466		823

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1284346v1 assembly for Parabacteroides distasonis WCA3-693-APC-2H
NCBI: GCA_012843465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.33	no
125439	gram_stain	BacteriaNetⓘ	negative	90.58	no
125439	motility	BacteriaNetⓘ	no	83.23	no
125439	spore_formation	BacteriaNetⓘ	no	99.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Parabacteroides distasonis WCA3-693-APC-2H
NCBI: GCA_012843465.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.27	no
125438	anaerobic	anaerobicⓘ	yes	84.31	no
125438	aerobic	aerobicⓘ	no	88.10	no
125438	spore-forming	spore-formingⓘ	no	89.62	no
125438	thermophilic	thermophileⓘ	no	93.45	no
125438	flagellated	motile2+ⓘ	no	87.60	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65698	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106899
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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