Strain identifier
BacDive ID: 158876
Type strain:
Species: Parabacteroides distasonis
Strain Designation: WCA3-693-APC-2H
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-2H
NCBI tax ID(s): 823 (species)
General
@ref: 65698
BacDive-ID: 158876
DSM-Number: 106899
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Parabacteroides distasonis WCA3-693-APC-2H is a mesophilic bacterium that was isolated from feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 823
- Matching level: species
strain history
- @ref: 65698
- history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-2H
doi: 10.13145/bacdive158876.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Tannerellaceae
- genus: Parabacteroides
- species: Parabacteroides distasonis
- full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006
synonyms
- @ref: 20215
- synonym: Bacteroides distasonis
@ref: 65698
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Tannerellaceae
genus: Parabacteroides
species: Parabacteroides distasonis
full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016
strain designation: WCA3-693-APC-2H
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
65698 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
65698 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 65698
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65698
- sample type: feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_1983.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_126;96_368;97_415;98_474;99_1983&stattab=map
- Last taxonomy: Parabacteroides distasonis subclade
- 16S sequence: MN537523
- Sequence Identity:
- Total samples: 38542
- soil counts: 88
- aquatic counts: 390
- animal counts: 38024
- plant counts: 40
Safety information
risk assessment
- @ref: 65698
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 65698
- description: Parabacteroides distasonis strain DSM 106899 16S ribosomal RNA gene, partial sequence
- accession: MN537523
- length: 1466
- database: ena
- NCBI tax ID: 823
Genome sequences
- @ref: 66792
- description: Parabacteroides distasonis WCA3-693-APC-2H
- accession: GCA_012843465
- assembly level: contig
- database: ncbi
- NCBI tax ID: 823
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 90.096 | no |
flagellated | no | 97.749 | no |
gram-positive | no | 97.308 | no |
anaerobic | yes | 97.321 | no |
aerobic | no | 98.193 | no |
halophile | no | 83.234 | no |
spore-forming | no | 95.607 | no |
thermophile | no | 99.363 | yes |
glucose-util | yes | 86.623 | no |
glucose-ferment | yes | 65.068 | no |
External links
@ref: 65698
culture collection no.: DSM 106899
straininfo link
- @ref: 111395
- straininfo: 403847
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
65698 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106899 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106899) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
111395 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403847.1 |