Strain identifier

BacDive ID: 158876

Type strain: No

Species: Parabacteroides distasonis

Strain Designation: WCA3-693-APC-2H

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-2H

NCBI tax ID(s): 823 (species)

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General

@ref: 65698

BacDive-ID: 158876

DSM-Number: 106899

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Parabacteroides distasonis WCA3-693-APC-2H is a mesophilic bacterium that was isolated from feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

NCBI tax id

  • NCBI tax id: 823
  • Matching level: species

strain history

  • @ref: 65698
  • history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-2H

doi: 10.13145/bacdive158876.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Tannerellaceae
  • genus: Parabacteroides
  • species: Parabacteroides distasonis
  • full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006
  • synonyms

    • @ref: 20215
    • synonym: Bacteroides distasonis

@ref: 65698

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Tannerellaceae

genus: Parabacteroides

species: Parabacteroides distasonis

full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016

strain designation: WCA3-693-APC-2H

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65698WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
65698COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 65698
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65698
  • sample type: feces; pig, 24 weeks old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1983.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_126;96_368;97_415;98_474;99_1983&stattab=map
  • Last taxonomy: Parabacteroides distasonis subclade
  • 16S sequence: MN537523
  • Sequence Identity:
  • Total samples: 38542
  • soil counts: 88
  • aquatic counts: 390
  • animal counts: 38024
  • plant counts: 40

Safety information

risk assessment

  • @ref: 65698
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65698
  • description: Parabacteroides distasonis strain DSM 106899 16S ribosomal RNA gene, partial sequence
  • accession: MN537523
  • length: 1466
  • database: ena
  • NCBI tax ID: 823

Genome sequences

  • @ref: 66792
  • description: Parabacteroides distasonis WCA3-693-APC-2H
  • accession: GCA_012843465
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 823

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.096no
flagellatedno97.749no
gram-positiveno97.308no
anaerobicyes97.321no
aerobicno98.193no
halophileno83.234no
spore-formingno95.607no
thermophileno99.363yes
glucose-utilyes86.623no
glucose-fermentyes65.068no

External links

@ref: 65698

culture collection no.: DSM 106899

straininfo link

  • @ref: 111395
  • straininfo: 403847

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65698Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106899Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106899)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111395Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403847.1