Parabacteroides distasonis (DSM 112022, APCS2/PD)

Name: Parabacteroides distasonis (DSM 112022, APCS2/PD)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159982

Type strain

Strain Designation APCS2/PD

Culture col. no. DSM 112022 APCS2/PD

NCBI tax ID(s) 823

Special Collections DSMZ

History DSMZ <- C. Tobin, Univ. College Cork, Ireland; APCS2/PD

Links

Parabacteroides distasonis APCS2/PD is a bacterium that was isolated from Human faeces.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 401535

DSM 112022

@ref 20215

Last LPSN update 2026-05-29 08:44:19

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Tannerellaceae

Genus Parabacteroides

Species Parabacteroides distasonis

Full scientific name Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006

Synonyms (1)

Bacteroides distasonis

BacDive ID	Other strains from **Parabacteroides distasonis** (17)	Type strain
12497	P. distasonis 10159, CIP 104284, DSM 20701, ATCC 8503, ... (type strain)
130882	P. distasonis SAB-131-CoC-3, DSM 29491
152089	P. distasonis CCUG 45716
156806	P. distasonis CCUG 65470
156930	P. distasonis CCUG 67118
157009	P. distasonis CCUG 68616
158876	P. distasonis WCA3-693-APC-2H, DSM 106899
158877	P. distasonis H6_9, DSM 108211
158878	P. distasonis H1_7, DSM 108218
161283	P. distasonis JCM 1294
161351	P. distasonis JCM 13400
161352	P. distasonis JCM 13401
161353	P. distasonis JCM 13402
161354	P. distasonis JCM 13403
161355	P. distasonis JCM 13404
169198	P. distasonis 31/2, DSM 24965, BEI HM-169
169199	P. distasonis Cla-AP-4, DSM 111137

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.726
125438	negative	92.327

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66886	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
66886	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
66886	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	97.942

Spore formation

@ref	Spore formation	Confidence
125439		99.336

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66886	Human faeces	Homo sapiens	Cork	Ireland	IRL	Europe	51.9036	-8.4684 51.9036/-8.4684

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66886	2	Risk group (German classification)

Phages

@ref	Name	Strain number
124042	Parabacteroides phage vB_PdiS_PDS1	DSM 112022

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1827989v1 assembly for Parabacteroides distasonis APCS2/PD	complete	GCA_018279895	823.3647	8122091251	823	97.78

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1827989v1 assembly for Parabacteroides distasonis APCS2/PD
NCBI: GCA_018279895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	97.94	no
125439	gram_stain	BacteriaNetⓘ	negative	90.73	no
125439	motility	BacteriaNetⓘ	no	76.16	no
125439	spore_formation	BacteriaNetⓘ	no	99.34	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Parabacteroides distasonis APCS2/PD
NCBI: GCA_018279895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.33	no
125438	anaerobic	anaerobicⓘ	yes	87.66	no
125438	aerobic	aerobicⓘ	no	89.99	no
125438	spore-forming	spore-formingⓘ	no	88.38	no
125438	thermophilic	thermophileⓘ	no	92.45	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Title	Authors	Journal	DOI	Year
Adaptations in gut Bacteroidales facilitate stable co-existence with their lytic bacteriophages.	Cortes-Martin A, Buttimer C, Maier JL, Tobin CA, Draper LA, Ross RP, Kleiner M, Hill C, Shkoporov AN.	Gut Microbes	10.1080/19490976.2025.2507775	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66886	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112022
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Parabacteroides distasonis (DSM 112022, APCS2/PD)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Phages

Sequence information

Genome sequences

Genome browser: GCA_018279895

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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