Strain identifier
BacDive ID: 159982
Type strain: 
Species: Parabacteroides distasonis
Strain Designation: APCS2/PD
Strain history: <- C. Tobin, Univ. College Cork, Ireland; APCS2/PD
NCBI tax ID(s): 823 (species)
General
@ref: 66886
BacDive-ID: 159982
DSM-Number: 112022
keywords: genome sequence, Bacteria, mesophilic
description: Parabacteroides distasonis APCS2/PD is a mesophilic bacterium that was isolated from Human faeces.
NCBI tax id
- NCBI tax id: 823
- Matching level: species
strain history
- @ref: 66886
- history: <- C. Tobin, Univ. College Cork, Ireland; APCS2/PD
doi: 10.13145/bacdive159982.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Tannerellaceae
- genus: Parabacteroides
- species: Parabacteroides distasonis
- full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006
synonyms
- @ref: 20215
- synonym: Bacteroides distasonis
@ref: 66886
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Tannerellaceae
genus: Parabacteroides
species: Parabacteroides distasonis
full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016
strain designation: APCS2/PD
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66886 | FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) | yes | https://mediadive.dsmz.de/medium/1203a | Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water |
| 66886 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 66886
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66886
- sample type: Human faeces
- geographic location: Cork
- country: Ireland
- origin.country: IRL
- continent: Europe
- latitude: 51.9036
- longitude: -8.4684
Safety information
risk assessment
- @ref: 66886
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Parabacteroides distasonis APCS2/PD
- accession: GCA_018279895
- assembly level: complete
- database: ncbi
- NCBI tax ID: 823
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.776 | no |
| gram-positive | no | 97.508 | no |
| anaerobic | yes | 97.597 | no |
| aerobic | no | 98.304 | no |
| halophile | no | 87.151 | no |
| spore-forming | no | 95.324 | no |
| thermophile | no | 99.295 | no |
| glucose-util | yes | 84.775 | no |
| motile | no | 90.672 | no |
| glucose-ferment | yes | 65.914 | no |
External links
@ref: 66886
culture collection no.: DSM 112022
straininfo link
- @ref: 112264
- straininfo: 401535
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66886 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112022 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112022) | |
| 112264 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401535.1 |