Flavobacterium lacicola | Type strain | KCTC 52571, NBRC 112883, IMCC 25901

Strain identifier

BacDive ID: 158799

Type strain:

Species: Flavobacterium lacicola

Culture col. no.: KCTC 52571, NBRC 112883, IMCC 25901

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Flavobacterium lacicola KCTC 52571 is an aerobe, gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from oligotrophic freshwater lake.

colony-forming
gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Bacteroidetes
	Class	Flavobacteriia
	Order	Flavobacteriales
	Family	Flavobacteriaceae
	Genus	Flavobacterium
	Species	Flavobacterium lacicola
	Full Scientific Name (PNU)	Flavobacterium lacicola Park et al. 2018

Information on morphological and physiological propertiesMorphology

[Ref.: #65559]	Gram stain	negative
[Ref.: #65559]	Cell length	1.0-1.5 µm
[Ref.: #65559]	Cell width	0.3-0.6 µm
[Ref.: #65559]	Cell shape	rod-shaped
[Ref.: #65559]	Motility	no

[Ref.: #65559]	Colony color	orange
[Ref.: #65559]	Colony shape	circular
[Ref.: #65559]	Incubation period	5 days
[Ref.: #65559]	Cultivation medium used	R2A

[Ref.: #65559]	Pigment production	yes
[Ref.: #65559]	Pigment name	carotenoid

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #65559]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65559]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65559]			growth	10-30 ̊C
[Ref.: #65559]			optimum	20 ̊C

[Ref.: #65559]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #65559]			optimum	7
[Ref.: #65559]			growth	6-8

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #65559]

Oxygen tolerance

aerobe

[Ref.: #65559]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65559]		NaCl		growth	0-1.0	%
[Ref.: #65559]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65559]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #65559]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #65559]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #65559]	casein	-	hydrolysis
[Ref.: #65559]	chitin ChEBI	-	hydrolysis
[Ref.: #65559]	D-galactose ChEBI	+	oxidation
[Ref.: #65559]	dextrin ChEBI	+	oxidation
[Ref.: #65559]	dna ChEBI	-	hydrolysis
[Ref.: #65559]	egg yolk	-	hydrolysis
[Ref.: #65559]	esculin ChEBI	+	hydrolysis
[Ref.: #65559]	gelatin ChEBI	-	hydrolysis
[Ref.: #65559]	glucose ChEBI	-	fermentation
[Ref.: #65559]	glucose 1-phosphate ChEBI	+	oxidation
[Ref.: #65559]	glycogen ChEBI	+	oxidation
[Ref.: #65559]	glycyl-l-glutamate ChEBI	+	oxidation
[Ref.: #65559]	lactose ChEBI	+	oxidation
[Ref.: #65559]	lactulose ChEBI	+	oxidation
[Ref.: #65559]	maltose ChEBI	+	oxidation
[Ref.: #65559]	nitrate ChEBI	-	reduction
[Ref.: #65559]	pectin ChEBI	+	hydrolysis
[Ref.: #65559]	starch ChEBI	+	hydrolysis
[Ref.: #65559]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65559]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65559]	tyrosine ChEBI	-	hydrolysis
[Ref.: #65559]	uridine ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #65559]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65559]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65559]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	kanamycin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65559]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65559]	tetracycline ChEBI	yes	30	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #65559]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65559]	acid phosphatase	+	3.1.3.2
[Ref.: #65559]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65559]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65559]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65559]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65559]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65559]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65559]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65559]	beta-galactosidase	+	3.2.1.23
[Ref.: #65559]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65559]	catalase	-	1.11.1.6
[Ref.: #65559]	cystine arylamidase	+	3.4.11.3
[Ref.: #65559]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65559]	esterase (C 4)	+
[Ref.: #65559]	esterase Lipase (C 8)	-
[Ref.: #65559]	leucine arylamidase	+	3.4.11.1
[Ref.: #65559]	lipase (C 14)	-
[Ref.: #65559]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65559]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65559]	trypsin	+	3.4.21.4
[Ref.: #65559]	urease	-	3.5.1.5
[Ref.: #65559]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65559]

Fatty acid	Percentage
C15:0 anteiso	31.3
C16:1ω6c / C16:1ω7c	19.7
C15:0 iso	13.3
C15:1 iso G	9.5
C16:0	4.1
C15:0 3OH	3.9
C14:0	2.8
C14:0 iso	2
C13:1	2
C16:0 3OH	1.9
C15:1 anteiso A	1.7
C12:0 iso	1.1
C15:0 2OH	1
C13:0 anteiso	1

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #65559]	Sample type/isolated from	oligotrophic freshwater lake
[Ref.: #65559]	Sampling date	2016-05-12
[Ref.: #65559]	Geographic location (country and/or sea, region)	Lake Soyang
[Ref.: #65559]	Country	Republic of Korea
[Ref.: #65559]	Country ISO 3 Code	KOR
[Ref.: #65559]	Continent	Asia
[Ref.: #65559]	Geographic location	37.9475°/127.8190°
[Ref.: #65559]	Enrichment culture	R2A
[Ref.: #65559]	Enrichment culture duration	7 days
[Ref.: #65559]	Enrichment culture temperature	20 ̊C

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65559]	16S rRNA gene sequence	KX505863		GenBank

[Ref.: #65559]

GC-content

34.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collectionsExternal links

[Ref.: #65559]

Culture collection no.

KCTC 52571, NBRC 112883, IMCC 25901

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#65559

Miri Park, Jaeho Song, Gi Gyun Nam, Suhyun Kim, Yochan Joung and Jang-Cheon Cho: Flavobacterium lacicola sp. nov., isolated from a freshwater lake. IJSEM 68: 1565 - 1570 2018 ( DOI 10.1099/ijsem.0.002712 )

* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium lacicola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF