Name: Flavobacterium lacicola KCTC 52571
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158799

Type strain:

Species: Flavobacterium lacicola

Culture col. no.: KCTC 52571, NBRC 112883, IMCC 25901

Strain history: <- Jang-Cheon Cho, Inha Univ.

NCBI tax ID(s): 2026655 (species)

Section

Flavobacterium lacicola KCTC 52571 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from oligotrophic freshwater lake.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium lacicola**
	Full Scientific Name (PNU)	Flavobacterium lacicola Park et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65559]	Gram stain	negative
[Ref.: #65559]	Cell length	1.0-1.5 µm
[Ref.: #65559]	Cell width	0.3-0.6 µm
[Ref.: #65559]	Cell shape	rod-shaped
[Ref.: #65559]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Motility	no

[Ref.: #65559]	Colony color	orange
[Ref.: #65559]	Colony shape	circular
[Ref.: #65559]	Incubation period	5 days
[Ref.: #65559]	Cultivation medium used	R2A

[Ref.: #65559]	Pigment production	yes
[Ref.: #65559]	Pigment name	carotenoid

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65559]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65559]

Culture medium growth

		Temperature
[Ref.: #65559]	growth	10-30 °C
[Ref.: #65559]	optimum	20 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #65559]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #65559]			optimum	7
[Ref.: #65559]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65559]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65559]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65559]		NaCl		growth	0-1.0	%
[Ref.: #65559]		NaCl		optimum	0	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65559]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #65559]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #65559]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #65559]	casein	-	hydrolysis
[Ref.: #65559]	chitin ChEBI	-	hydrolysis
[Ref.: #65559]	D-galactose ChEBI	+	oxidation
[Ref.: #65559]	dextrin ChEBI	+	oxidation
[Ref.: #65559]	dna ChEBI	-	hydrolysis
[Ref.: #65559]	egg yolk	-	hydrolysis
[Ref.: #65559]	esculin ChEBI	+	hydrolysis
[Ref.: #65559]	gelatin ChEBI	-	hydrolysis
[Ref.: #65559]	glucose ChEBI	-	fermentation
[Ref.: #65559]	glucose 1-phosphate ChEBI	+	oxidation
[Ref.: #65559]	glycogen ChEBI	+	oxidation
[Ref.: #65559]	glycyl-l-glutamate ChEBI	+	oxidation
[Ref.: #65559]	lactose ChEBI	+	oxidation
[Ref.: #65559]	lactulose ChEBI	+	oxidation
[Ref.: #65559]	maltose ChEBI	+	oxidation
[Ref.: #65559]	nitrate ChEBI	-	reduction
[Ref.: #65559]	pectin ChEBI	+	hydrolysis
[Ref.: #65559]	starch ChEBI	+	hydrolysis
[Ref.: #65559]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65559]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65559]	tyrosine ChEBI	-	hydrolysis
[Ref.: #65559]	uridine ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #65559]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65559]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65559]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	kanamycin ChEBI	yes	10	µg (disc)
[Ref.: #65559]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65559]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65559]	tetracycline ChEBI	yes	30	µg (disc)

	Metabolite production	Metabolite
[Ref.: #65559]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #65559]	acid phosphatase	+	3.1.3.2
[Ref.: #65559]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65559]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65559]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65559]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65559]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65559]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65559]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65559]	beta-galactosidase	+	3.2.1.23
[Ref.: #65559]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65559]	catalase	-	1.11.1.6
[Ref.: #65559]	cystine arylamidase	+	3.4.11.3
[Ref.: #65559]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65559]	esterase (C 4)	+
[Ref.: #65559]	esterase Lipase (C 8)	-
[Ref.: #65559]	leucine arylamidase	+	3.4.11.1
[Ref.: #65559]	lipase (C 14)	-
[Ref.: #65559]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65559]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65559]	trypsin	+	3.4.21.4
[Ref.: #65559]	urease	-	3.5.1.5
[Ref.: #65559]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65559]

Fatty acid	Percentage
C15:0 anteiso	31.3
C16:1ω6c / C16:1ω7c	19.7
C15:0 iso	13.3
C15:1 iso G	9.5
C16:0	4.1
C15:0 3OH	3.9
C14:0	2.8
C14:0 iso	2
C13:1	2
C16:0 3OH	1.9
C15:1 anteiso A	1.7
C12:0 iso	1.1
C15:0 2OH	1
C13:0 anteiso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65559]	Sample type/isolated from	oligotrophic freshwater lake
[Ref.: #65559]	Sampling date	2016-05-12
[Ref.: #65559]	Geographic location (country and/or sea, region)	Lake Soyang
[Ref.: #65559]	Country	Republic of Korea
[Ref.: #65559]	Country ISO 3 Code	KOR
[Ref.: #65559]	Continent	Asia
[Ref.: #65559]	Geographic location	37.9475°/127.8190°
[Ref.: #65559]	Enrichment culture	R2A
[Ref.: #65559]	Enrichment culture duration	7 days
[Ref.: #65559]	Enrichment culture temperature	20 ̊C

[Ref.: #67771]	Sample type/isolated from	From freshwater lake
[Ref.: #67771]	Geographic location (country and/or sea, region)	Lake Soyang
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.9475°/127.8190°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65559]	16S rRNA gene sequence	KX505863		GenBank

[Ref.: #65559]	GC-content	34.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	34.2 mol%

Availability in culture collections External links

[Ref.: #65559]

Culture collection no.

KCTC 52571, NBRC 112883, IMCC 25901

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium lacicola sp. nov., isolated from a freshwater lake.	Park M, Song J, Nam GG, Kim S, Joung Y, Cho JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002712	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65559

Miri Park, Jaeho Song, Gi Gyun Nam, Suhyun Kim, Yochan Joung and Jang-Cheon Cho: Flavobacterium lacicola sp. nov., isolated from a freshwater lake. IJSEM 68: 1565 - 1570 2018 ( DOI 10.1099/ijsem.0.002712 , PubMed 29537359 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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