Name: Companilactobacillus metriopterae Hime5-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158793

Type strain:

Species: Companilactobacillus metriopterae

Strain Designation: Hime5-1

Culture col. no.: JCM 31635, DSM 103730, Hime 5-1

Strain history: S. Kawasaki; Dept. of Biosci., Tokyo Univ. of Agric., Japan; Hime5-1.

NCBI tax ID(s): 1909267 (species)

SI-ID 397160

DSM 103730

Special Collections

Section

When using BacDive for research please cite our paper

Companilactobacillus metriopterae Hime5-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from gut of grasshopper Metrioptera engelhardti.

Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus metriopterae**
	Full Scientific Name (LPSN)	Companilactobacillus metriopterae (Chiba et al. 2018) Zheng et al. 2020

	Synonym	Lactobacillus metriopterae
	Synonym	Lactobacillus terrae

Information on morphological and physiological properties Morphology

[Ref.: #65552]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %92.246

[Ref.: #65552]	Cell length	0.6-1.2 µm

[Ref.: #65552]	Cell width	0.2 µm

[Ref.: #65552]	Cell shape	rod-shaped

[Ref.: #65552]	Motility	no

[Ref.: #65552]	Colony size	1-2 mm
[Ref.: #65552]	Colony color	yellowish
[Ref.: #65552]	Incubation period	2 days
[Ref.: #65552]	Cultivation medium used	MRS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65552]

Culture medium

MRS agar

[Ref.: #65552]

Culture medium growth

[Ref.: #67232]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #67232]

Culture medium growth

[Ref.: #67232]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67232]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #65552]		growth	15-37 °C
[Ref.: #65552]	no	growth	10 °C
[Ref.: #65552]	no	growth	45 °C
[Ref.: #67232]		growth	30 °C
[Ref.: #67770]		growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65552]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.2

[Ref.: #65552]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65552]		NaCl		growth	7.0	%(w/v)
[Ref.: #65552]		NaCl	no	growth	7.5	%(w/v)

[Ref.: #65552]	Observation	singly, in pairs or short chains
[Ref.: #65552]	Observation	homofermentative

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65552]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65552]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65552]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #65552]	arbutin ChEBI	-	builds acid from
[Ref.: #65552]	cellobiose ChEBI	+/-	builds acid from
[Ref.: #65552]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65552]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65552]	D-fructose ChEBI	+	builds acid from
[Ref.: #65552]	D-fucose ChEBI	-	builds acid from
[Ref.: #65552]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #65552]	D-glucose ChEBI	+	builds acid from
[Ref.: #65552]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65552]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65552]	D-mannose ChEBI	+	builds acid from
[Ref.: #65552]	D-ribose ChEBI	+	builds acid from
[Ref.: #65552]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65552]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65552]	D-xylose ChEBI	-	builds acid from
[Ref.: #65552]	erythritol ChEBI	-	builds acid from
[Ref.: #65552]	esculin ChEBI	+	builds acid from
[Ref.: #65552]	galactitol ChEBI	-	builds acid from
[Ref.: #65552]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #65552]	gluconate ChEBI	-	builds acid from
[Ref.: #65552]	glucose ChEBI	-	builds gas from
[Ref.: #65552]	glucose ChEBI	+	fermentation
[Ref.: #65552]	glycerol ChEBI	-	builds acid from
[Ref.: #65552]	glycogen ChEBI	-	builds acid from
[Ref.: #65552]	inulin ChEBI	-	builds acid from
[Ref.: #65552]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65552]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65552]	L-fucose ChEBI	-	builds acid from
[Ref.: #65552]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65552]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65552]	L-xylose ChEBI	-	builds acid from
[Ref.: #65552]	lactose ChEBI	-	builds acid from
[Ref.: #65552]	maltose ChEBI	-	builds acid from
[Ref.: #65552]	melezitose ChEBI	-	builds acid from
[Ref.: #65552]	melibiose ChEBI	-	builds acid from
[Ref.: #65552]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65552]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65552]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65552]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65552]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65552]	nitrate ChEBI	-	reduction
[Ref.: #65552]	raffinose ChEBI	-	builds acid from
[Ref.: #65552]	ribitol ChEBI	-	builds acid from
[Ref.: #65552]	salicin ChEBI	+/-	builds acid from
[Ref.: #65552]	starch ChEBI	-	builds acid from
[Ref.: #65552]	sucrose ChEBI	-	builds acid from
[Ref.: #65552]	trehalose ChEBI	+/-	builds acid from
[Ref.: #65552]	turanose ChEBI	-	builds acid from
[Ref.: #65552]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65552]	alanine arylamidase	+	3.4.11.2
[Ref.: #65552]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65552]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65552]	catalase	-	1.11.1.6
[Ref.: #65552]	glycin arylamidase	+
[Ref.: #65552]	phenylalanine arylamidase	+
[Ref.: #65552]	proline-arylamidase	+	3.4.11.5
[Ref.: #65552]	tyrosine arylamidase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65552]

Fatty acid	Percentage
C18:1ω9c	52.1
C16:0	17.8
unknown 18.846 / C19:1ω6c / C19:0 cycl	11.9
C18:1ω6c / C18:1ω7c	10.3
C18:0	3.8
C19:0 iso	2.3
C16:1ω6c / C16:1ω7c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65552]	Sample type/isolated from	gut of grasshopper Metrioptera engelhardti
[Ref.: #65552]	Sampling date	2015-09
[Ref.: #65552]	Geographic location (country and/or sea, region)	Nonomi plateau, Nagano Prefecture
[Ref.: #65552]	Country	Japan
[Ref.: #65552]	Country ISO 3 Code	JPN
[Ref.: #65552]	Continent	Asia
[Ref.: #65552]	Geographic location	37.0000°/138.5670°
[Ref.: #65552]	Enrichment culture	MRS agar

[Ref.: #67770]	Sample type/isolated from	Grasshopper, Metrioptera engelhardti (Japanese common name: himegisu)
[Ref.: #67770]	Host species	Metrioptera engelhardti
[Ref.: #67770]	Geographic location (country and/or sea, region)	mountainous areas of the Nonomi plateau in Nagano Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67232]	Sample type/isolated from	insect
[Ref.: #67232]	Geographic location (country and/or sea, region)	Nagano prefecture
[Ref.: #67232]	Country	Japan
[Ref.: #67232]	Country ISO 3 Code	JPN
[Ref.: #67232]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC190736 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	24
Animal Samples	105
Plant Samples	7
Total Samples	137

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65552]	Lactobacillus metriopterae gene for 16S ribosomal RNA, partial sequence	LC190736		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Companilactobacillus metriopterae JCM 31635	GCA_004117915	contig	GenBank ENA	1909267 tax ID
[Ref.: #66792]	Lactobacillus metriopterae strain JCM 31635	1909267.3	wgs	PATRIC	1909267 tax ID	*
[Ref.: #66792]	Companilactobacillus metriopterae JCM 31635	2881902429	draft	JGI IMG/M	1909267 tax ID	*

[Ref.: #65552]	GC-content	37.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	32.8 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	37-37.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus metriopterae strain JCM 31635 PATRIC: 1909267.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.246	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	85.803	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	84.927	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	92.426	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	93.184	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus metriopterae JCM 31635 NCBI: GCA_004117915
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	54.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	59.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	84
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.2

Availability in culture collections External links

[Ref.: #67232]

Culture collection no.

JCM 31635, DSM 103730, Hime 5-1

[Ref.: #111341]

SI-ID 397160

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.	Chiba M, Itabashi T, Hirai K, Sakamoto M, Ohkuma M, Ishige T, Kawasaki S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002694	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65552

Makoto Chiba, Takanori Itabashi, Koujiro Hirai, Mitsuo Sakamoto, Moriya Ohkuma, Taichiro Ishige and Shinji Kawasaki: Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti. IJSEM 68: 1484 - 1489 2018 ( DOI 10.1099/ijsem.0.002694 , PubMed 29543150 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67232

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103730

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111341

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397160.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Lactobacillus metriopterae strain JCM 31635

Companilactobacillus metriopterae JCM 31635

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