Companilactobacillus metriopterae (JCM 31635, DSM 103730, Hime 5-1)

Name: Companilactobacillus metriopterae (JCM 31635, DSM 103730, Hime 5-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158793

Type strain

Strain Designation Hime5-1

Culture col. no. JCM 31635 DSM 103730 Hime 5-1 Hime5-1

NCBI tax ID(s) 1909267

Special Collections DSMZ JCM Literature strains

History <- S. Kawasaki, Dept. Bio-Science, Tokyo Univ. Agriculture, Japan; Hime5-1 <- S. Kawasaki and M. Chiba S. Kawasaki; Dept. of Biosci., Tokyo Univ. of Agric., Japan; Hime5-1.

Links

Companilactobacillus metriopterae Hime5-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from gut of grasshopper Metrioptera engelhardti.

Gram-positive rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397160

JCM 31635,DSM 103730

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus metriopterae

Full scientific name Companilactobacillus metriopterae (Chiba et al. 2018) Zheng et al. 2020

Synonyms (2)

Lactobacillus terrae
Lactobacillus metriopterae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
65552	positive	0.6-1.2 µm	0.2 µm	rod-shaped
125438	positive					92.246

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
65552	1-2 mm	yellowish	2 days	MRS agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65552	MRS agar
67232	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65552	positive	growth	15-37
65552	negative	growth	10
65552	negative	growth	45
67232	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65552	facultative anaerobe
125439	obligate aerobe	98.2

Spore formation

65552

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65552	NaCl	positive	growth	7.0 %(w/v)
65552	NaCl		growth	7.5 %(w/v)

Observation

@ref	Observation
65552	singly, in pairs or short chains
65552	homofermentative

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65552	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
65552	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
65552	27613 ChEBI	amygdalin	+/-	builds acid from
65552	18305 ChEBI	arbutin	-	builds acid from
65552	17057 ChEBI	cellobiose	+/-	builds acid from
65552	17108 ChEBI	D-arabinose	-	builds acid from
65552	18333 ChEBI	D-arabitol	-	builds acid from
65552	15824 ChEBI	D-fructose	+	builds acid from
65552	28847 ChEBI	D-fucose	-	builds acid from
65552	12936 ChEBI	D-galactose	+/-	builds acid from
65552	17634 ChEBI	D-glucose	+	builds acid from
65552	62318 ChEBI	D-lyxose	-	builds acid from
65552	16899 ChEBI	D-mannitol	-	builds acid from
65552	16024 ChEBI	D-mannose	+	builds acid from
65552	16988 ChEBI	D-ribose	+	builds acid from
65552	17924 ChEBI	D-sorbitol	-	builds acid from
65552	16443 ChEBI	D-tagatose	-	builds acid from
65552	65327 ChEBI	D-xylose	-	builds acid from
65552	17113 ChEBI	erythritol	-	builds acid from
65552	4853 ChEBI	esculin	+	builds acid from
65552	16813 ChEBI	galactitol	-	builds acid from
65552	28066 ChEBI	gentiobiose	+/-	builds acid from
65552	24265 ChEBI	gluconate	-	builds acid from
65552	17234 ChEBI	glucose	-	builds gas from
65552	17234 ChEBI	glucose	+	fermentation
65552	17754 ChEBI	glycerol	-	builds acid from
65552	28087 ChEBI	glycogen	-	builds acid from
65552	15443 ChEBI	inulin	-	builds acid from
65552	30849 ChEBI	L-arabinose	-	builds acid from
65552	18403 ChEBI	L-arabitol	-	builds acid from
65552	18287 ChEBI	L-fucose	-	builds acid from
65552	62345 ChEBI	L-rhamnose	-	builds acid from
65552	17266 ChEBI	L-sorbose	-	builds acid from
65552	65328 ChEBI	L-xylose	-	builds acid from
65552	17716 ChEBI	lactose	-	builds acid from
65552	17306 ChEBI	maltose	-	builds acid from
65552	6731 ChEBI	melezitose	-	builds acid from
65552	28053 ChEBI	melibiose	-	builds acid from
65552	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65552	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65552	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65552	17268 ChEBI	myo-inositol	-	builds acid from
65552	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65552	17632 ChEBI	nitrate	-	reduction
65552	16634 ChEBI	raffinose	-	builds acid from
65552	15963 ChEBI	ribitol	-	builds acid from
65552	17814 ChEBI	salicin	+/-	builds acid from
65552	28017 ChEBI	starch	-	builds acid from
65552	17992 ChEBI	sucrose	-	builds acid from
65552	27082 ChEBI	trehalose	+/-	builds acid from
65552	32528 ChEBI	turanose	-	builds acid from
65552	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
65552	alanine arylamidase	+	3.4.11.2
65552	alkaline phosphatase	+	3.1.3.1
65552	arginine dihydrolase	-	3.5.3.6
65552	catalase	-	1.11.1.6
65552	glycin arylamidase	+
65552	phenylalanine arylamidase	+
65552	proline-arylamidase	+	3.4.11.5
65552	tyrosine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65552

Fatty acid	Percentage
C18:1ω9c	52.1
C16:0	17.8
unknown 18.846 / C19:1ω6c / C19:0 cycl	11.9
C18:1ω6c / C18:1ω7c	10.3
C18:0	3.8
C19:0 iso	2.3
C16:1ω6c / C16:1ω7c	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Host species
65552	gut of grasshopper Metrioptera engelhardti	2015-09	Nonomi plateau, Nagano Prefecture	Japan	JPN	Asia	37	138.567 37/138.567	MRS agar
67770	Grasshopper, Metrioptera engelhardti (Japanese common name: himegisu)		mountainous areas of the Nonomi plateau in Nagano Pref.	Japan	JPN	Asia				Metrioptera engelhardti
67232	insect		Nagano prefecture	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC190736 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	24
Animal Samples	105
Plant Samples	7
Total Samples	137

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM411791v1 assembly for Companilactobacillus metriopterae JCM 31635	contig	GCA_004117915	1909267.3	2881902429	1909267	76.15

16S sequences

@ref	Description	Accession	Database
65552	Lactobacillus metriopterae gene for 16S ribosomal RNA, partial sequence	LC190736

GC content

@ref	GC-content (mol%)	Method
65552	37.3	high performance liquid chromatography (HPLC)
67770	32.8	genome sequence analysis
67770	37-37.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus metriopterae JCM 31635
NCBI: GCA_004117915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	54.90	no
125439	motility	BacteriaNetⓘ	yes	59.40	no
125439	gram_stain	BacteriaNetⓘ	positive	84.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus metriopterae strain JCM 31635
PATRIC: 1909267.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.25	yes
125438	anaerobic	anaerobicⓘ	no	85.80	yes
125438	spore-forming	spore-formingⓘ	no	84.93	yes
125438	thermophilic	thermophileⓘ	no	92.43	yes
125438	aerobic	aerobicⓘ	no	93.18	no
125438	flagellated	motile2+ⓘ	no	88.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.	Chiba M, Itabashi T, Hirai K, Sakamoto M, Ohkuma M, Ishige T, Kawasaki S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002694	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65552	Makoto Chiba, Takanori Itabashi, Koujiro Hirai, Mitsuo Sakamoto, Moriya Ohkuma, Taichiro Ishige and Shinji Kawasaki: Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti. IJSEM 68: 1484 - 1489 2018 ( DOI 10.1099/ijsem.0.002694 , PubMed 29543150 )
#67232	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103730
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus metriopterae (JCM 31635, DSM 103730, Hime 5-1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004117915

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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