Streptococcus penaeicida (CECT 8596, DSM 26545, CAIM 1838)

Name: Streptococcus penaeicida (CECT 8596, DSM 26545, CAIM 1838)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158794

Type strain

Culture col. no. CECT 8596 DSM 26545 CAIM 1838 CIP 111643

NCBI tax ID(s) 1765960

Special Collections DSMZ Literature strains CIP

History <- B. Gomez-Gil, CAIM <- M. Morales, Centro de Investigación en Alimentación y Desarrollo A.C., Mexico CIP <- 2018, B. Gomez-Gil, CIAD, Sinaloa, Mexico, strain: CAIM 1838

Links

Streptococcus penaeicida CECT 8596 is a facultative anaerobe, Gram-positive, coccus-shaped prokaryote that forms circular colonies and was isolated from hepatopancreas of a cultured diseased Pacific white shrimp .

Gram-positive coccus-shaped colony-forming facultative anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401319

CAIM 1838,CECT 8596,DSM 26545

@ref 20215

Last LPSN update 2025-12-16 10:08:06

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus penaeicida

Full scientific name Streptococcus penaeicida Morales-Covarrubias et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
65553	positive	coccus-shaped
121658	positive	coccus-shaped

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony shape	Medium used
65553	alpha	1	0.75-1.0 mm	circular	blood agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65553	blood agar
66491	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
121658	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65553	positive	growth	4-40
66491	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65553	positive	growth	5.5-10	alkaliphile
65553		growth	4-5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65553	facultative anaerobe
125439	microaerophile	94.1

Spore formation

@ref	Spore formation	Confidence
65553
125439		97.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65553	NaCl	positive	growth	0-5.5 %(w/v)
65553	NaCl		growth	6-10 %(w/v)

Observation

65553

ObservationReacts with Lancefield group B antisera

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65553	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
65553	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
65553	27613 ChEBI	amygdalin	+	builds acid from
65553	18305 ChEBI	arbutin	+	builds acid from
65553	29016 ChEBI	arginine	+	hydrolysis
65553	17057 ChEBI	cellobiose	+	builds acid from
65553	17108 ChEBI	D-arabinose	-	builds acid from
65553	18333 ChEBI	D-arabitol	-	builds acid from
65553	15824 ChEBI	D-fructose	+	builds acid from
65553	28847 ChEBI	D-fucose	-	builds acid from
65553	12936 ChEBI	D-galactose	+	builds acid from
65553	17634 ChEBI	D-glucose	+	builds acid from
65553	62318 ChEBI	D-lyxose	-	builds acid from
65553	16024 ChEBI	D-mannose	+	builds acid from
65553	16988 ChEBI	D-ribose	+	builds acid from
65553	16443 ChEBI	D-tagatose	-	builds acid from
65553	65327 ChEBI	D-xylose	-	builds acid from
65553	17113 ChEBI	erythritol	-	builds acid from
65553	4853 ChEBI	esculin	+	builds acid from
65553	16813 ChEBI	galactitol	-	builds acid from
65553	28066 ChEBI	gentiobiose	+	builds acid from
65553	24265 ChEBI	gluconate	-	builds acid from
65553	17754 ChEBI	glycerol	-	builds acid from
65553	28087 ChEBI	glycogen	+	builds acid from
65553	15443 ChEBI	inulin	-	builds acid from
65553	30849 ChEBI	L-arabinose	-	builds acid from
65553	18403 ChEBI	L-arabitol	-	builds acid from
65553	18287 ChEBI	L-fucose	-	builds acid from
65553	62345 ChEBI	L-rhamnose	-	builds acid from
65553	17266 ChEBI	L-sorbose	+	builds acid from
65553	65328 ChEBI	L-xylose	-	builds acid from
65553	17716 ChEBI	lactose	+	builds acid from
65553	17306 ChEBI	maltose	+	builds acid from
65553	29864 ChEBI	mannitol	+	builds acid from
65553	6731 ChEBI	melezitose	+	builds acid from
65553	28053 ChEBI	melibiose	-	builds acid from
65553	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65553	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65553	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from
65553	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65553	17268 ChEBI	myo-inositol	-	builds acid from
65553	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65553	17632 ChEBI	nitrate	-	reduction
65553	27941 ChEBI	pullulan	+	builds acid from
65553	16634 ChEBI	raffinose	-	builds acid from
65553	16634 ChEBI	raffinose	+	builds acid from
65553	15963 ChEBI	ribitol	-	builds acid from
65553	17814 ChEBI	salicin	+	builds acid from
65553	30911 ChEBI	sorbitol	+	builds acid from
65553	28017 ChEBI	starch	+	builds acid from
65553	17992 ChEBI	sucrose	+	builds acid from
65553	27082 ChEBI	trehalose	+	builds acid from
65553	32528 ChEBI	turanose	-	builds acid from
65553	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65553	15688 ChEBI	acetoin
65553	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65553	acid phosphatase	+/-	3.1.3.2
65553	alkaline phosphatase	+/-	3.1.3.1
65553	alpha-chymotrypsin	-	3.4.21.1
65553	alpha-fucosidase	-	3.2.1.51
65553	alpha-galactosidase	-	3.2.1.22
65553	alpha-galactosidase	+	3.2.1.22
65553	alpha-glucosidase	+	3.2.1.20
65553	alpha-mannosidase	-	3.2.1.24
65553	beta-galactosidase	-	3.2.1.23
65553	beta-glucosidase	+	3.2.1.21
65553	beta-glucuronidase	+	3.2.1.31
65553	catalase	-	1.11.1.6
65553	esterase (C 4)	-
65553	esterase Lipase (C 8)	-
65553	leucine arylamidase	+/-	3.4.11.1
65553	lipase (C 14)	-
65553	lysine decarboxylase	-	4.1.1.18
65553	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65553	naphthol-AS-BI-phosphohydrolase	+/-
65553	ornithine decarboxylase	-	4.1.1.17
65553	trypsin	-	3.4.21.4
65553	tryptophan deaminase	-	4.1.99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Arthropoda	#Crustacea
#Host Body-Site	#Organ	#Liver
#Infection	#Disease	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
65553	hepatopancreas of a cultured diseased Pacific white shrimp (Penaeus vannamei)	2009-11	Champerico	Guatemala	GTM	Middle and South America	14.2792	-91.8917 14.2792/-91.8917
121658	Animal, White shrimp			Guatemala	GTM	North America			2009-11-16
66491	juvenile penaeid shrimp (Litopenaeus vannamei), hepatopancreas			Guatemala	GTM	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121658	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM288777v1 assembly for Streptococcus penaeicida CAIM 1838	contig	GCA_002887775	1765960.4	2997944163	1765960	46.03
66792	Streptococcus penaeicida strain CAIM 1838	contig		1765960.3		1765960	42.3

16S sequences

@ref	Description	Accession	Database
65553	Streptococcus penaeicida 16S ribosomal RNA gene, partial sequence	KU212904

GC content

@ref	GC-content (mol%)	Method
65553	38.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptococcus penaeicida CAIM 1838
NCBI: GCA_002887775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	no	78.30	no
125439	gram_stain	BacteriaNetⓘ	positive	76.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptococcus penaeicida strain CAIM 1838
PATRIC: 1765960.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.06	yes
125438	anaerobic	anaerobicⓘ	no	89.95	no
125438	spore-forming	spore-formingⓘ	no	87.04	no
125438	aerobic	aerobicⓘ	no	96.74	yes
125438	thermophilic	thermophileⓘ	no	93.78	no
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	An Update on Novel Taxa and Revised Taxonomic Status of Bacteria (Including Members of the Phylum Planctomycetota) Isolated from Aquatic Host Species Described in 2018 to 2021.	Burbick CR, Munson E, Lawhon SD, Zapp A, Villaflor M, Thelen E.	J Clin Microbiol	10.1128/jcm.01426-22	2023
Phylogeny	Streptococcus penaeicida sp. nov., isolated from a diseased farmed Pacific white shrimp (Penaeus vannamei).	Morales-Covarrubias MS, Del Carmen Bolan-Mejia M, Vela Alonso AI, Fernandez-Garayzabal JF, Gomez-Gil B	Int J Syst Evol Microbiol	10.1099/ijsem.0.002693	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65553	Maria Soledad Morales-Covarrubias, María del Carmen Bolan-Mejía, Ana Isabel Vela Alonso, Jose F. Fernandez-Garayzabal and Bruno Gomez-Gil: Streptococcus penaeicida sp. nov., isolated from a diseased farmed Pacific white shrimp (Penaeus vannamei). IJSEM 68: 1490 - 1495 2018 ( DOI 10.1099/ijsem.0.002693 , PubMed 29533175 )
#66491	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26545
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#121658	Collection of Institut Pasteur ; Curators of the CIP; CIP 111643
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptococcus penaeicida (CECT 8596, DSM 26545, CAIM 1838)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002887775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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