Adhaeribacter swui (KCTC 52873, NBRC 112824, 17mud1-7)

Name: Adhaeribacter swui (KCTC 52873, NBRC 112824, 17mud1-7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158784

Type strain

Strain Designation 17mud1-7

Culture col. no. KCTC 52873 NBRC 112824 17mud1-7

NCBI tax ID(s) 2086471

Special Collections KCTC Literature strains

History <- Myung Kyum Kim, Seoul Womens Univ., Korea

Links

Adhaeribacter swui 17mud1-7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from wet mud.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285739

KCTC 52873,NBRC 112824

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Adhaeribacter

Species Adhaeribacter swui

Full scientific name Adhaeribacter swui Kim et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
65538	negative	2.0-2.5 µm	0.5-1.0 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				99.8
125438	negative				95.208

Colony morphology

@ref	Colony color	Colony shape	Medium used
65538	pink	circular	R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth
65538	Trypticase Soy Agar (TSA)
65538	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
65538	positive	growth	18-37
65538	positive	optimum	28
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
65538	positive	optimum	7.0
65538	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65538	aerobe
67771	aerobe
125439	obligate aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65538	NaCl	positive	growth	0-1 %(w/v)

Observation

@ref	Observation
65538	UV-C radiation resistance
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65538	17128 ChEBI	adipate	-	assimilation
65538	17634 ChEBI	D-glucose	+	assimilation
65538	16899 ChEBI	D-mannitol	-	assimilation
65538	16024 ChEBI	D-mannose	+	assimilation
65538	27689 ChEBI	decanoate	-	assimilation
65538	4853 ChEBI	esculin	+	hydrolysis
65538	17234 ChEBI	glucose	-	fermentation
65538	30849 ChEBI	L-arabinose	+	assimilation
65538	25115 ChEBI	malate	-	assimilation
65538	17306 ChEBI	maltose	+	assimilation
65538	506227 ChEBI	N-acetylglucosamine	+	assimilation
65538	17632 ChEBI	nitrate	-	reduction
65538	18401 ChEBI	phenylacetate	-	assimilation
65538	32032 ChEBI	potassium gluconate	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65538	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65538	6-phospho-beta-galactosidase	+	3.2.1.85
65538	acid phosphatase	+	3.1.3.2
65538	alkaline phosphatase	+	3.1.3.1
65538	alpha-chymotrypsin	+	3.4.21.1
65538	alpha-fucosidase	-	3.2.1.51
65538	alpha-galactosidase	+	3.2.1.22
65538	alpha-glucosidase	+	3.2.1.20
65538	alpha-mannosidase	+	3.2.1.24
65538	arginine dihydrolase	+	3.5.3.6
65538	beta-galactosidase	+	3.2.1.23
65538	beta-glucosidase	+	3.2.1.21
65538	beta-glucuronidase	+	3.2.1.31
65538	catalase	+	1.11.1.6
65538	cystine arylamidase	+	3.4.11.3
65538	cytochrome oxidase	+	1.9.3.1
65538	esterase (C 4)	+
65538	esterase Lipase (C 8)	+
65538	leucine arylamidase	+	3.4.11.1
65538	lipase (C 14)	-
65538	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65538	naphthol-AS-BI-phosphohydrolase	+
65538	trypsin	-	3.4.21.4
65538	urease	+	3.5.1.5
65538	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65538

Fatty acid	Percentage
iso-C17:1 U / anteiso-C17:1 B	21.3
C15:0 iso	19.6
C16:1ω7c / C16:1ω6c	8.7
C16:1ω5c	8.7
C17:0 iso 3OH	7.9
C15:0 iso 3OH	4.5
C15:1 iso h / C13:0 3OH	4.2
C14:1ω5c	3.2
C15:0 anteiso	1.9
C17:1ω6c	1.9
C17:1ω7c	1.4
iso-C19:1 I	1.3
C19:0 iso	1.3
C16:0	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
65538	wet mud	Boryeong, Chungnam Province	Republic of Korea	KOR	Asia	36.3368	126.615 36.3368/126.615	R2A	4-5 days	25
67771	From wet mud	Boryeong, Chungnam province	Republic of Korea	KOR	Asia	36.3368	126.615 36.3368/126.615

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1421780v1 assembly for Adhaeribacter swui KCTC 52873	complete	GCA_014217805	2086471.3	2995115682	2086471	98.38

16S sequences

@ref	Description	Accession	Database
65538	Adhaeribacter swui strain 17mud1-7 16S ribosomal RNA gene, partial sequence	KY924849

GC content

@ref	GC-content (mol%)	Method
65538	45.9	real time PCR (RTD-PCR)
67771	45.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Adhaeribacter swui strain KCTC 52873
PATRIC: 2086471.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	no	76.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Adhaeribacter swui KCTC 52873
NCBI: GCA_014217805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.21	no
125438	anaerobic	anaerobicⓘ	no	97.26	yes
125438	aerobic	aerobicⓘ	yes	88.17	yes
125438	spore-forming	spore-formingⓘ	no	83.99	no
125438	thermophilic	thermophileⓘ	no	94.99	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Adhaeribacter arboris sp. nov., and Adhaeribacter pallidiroseus sp. nov., novel bacteria isolated from birch tree (Betula platyphylla).	Kang H, Kim H, Cha I, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004516	2020
Phylogeny	Adhaeribacter rhizoryzae sp. nov., a fibrillar matrix-producing bacterium isolated from the rhizosphere of rice plant.	Chhetri G, Kim J, Kim I, Lee B, Jang W, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004422	2020
Phylogeny	Adhaeribacter swui sp. nov., isolated from wet mud.	Kim DU, Kim KW, Kang MS, Kim JY, Jang JH, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002631	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65538	Dong-Uk Kim, Kwan Woo Kim, Myung-Suk Kang, Ju-Young Kim, Jun Hwee Jang and Myung Kyum Kim: Adhaeribacter swui sp. nov., isolated from wet mud. IJSEM 68: 1096 - 1100 2018 ( DOI 10.1099/ijsem.0.002631 , PubMed 29458531 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Adhaeribacter swui (KCTC 52873, NBRC 112824, 17mud1-7)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014217805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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