Name: Adhaeribacter swui 17mud1-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158784

Type strain:

Species: Adhaeribacter swui

Strain Designation: 17mud1-7

Culture col. no.: KCTC 52873, NBRC 112824

Strain history: <- Myung Kyum Kim, Seoul Womens Univ., Korea

NCBI tax ID(s): 2086471 (species)

Section

Adhaeribacter swui 17mud1-7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from wet mud.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Adhaeribacter*
	Species	**Adhaeribacter swui**
	Full Scientific Name (LPSN)	Adhaeribacter swui Kim et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65538]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #65538]	Cell length	2.0-2.5 µm

[Ref.: #65538]	Cell width	0.5-1.0 µm

[Ref.: #65538]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65538]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #65538]	Colony color	pink
[Ref.: #65538]	Colony shape	circular
[Ref.: #65538]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65538]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #65538]

Culture medium growth

[Ref.: #65538]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65538]

Culture medium growth

		Temperature
[Ref.: #65538]	growth	18-37 °C
[Ref.: #65538]	optimum	28 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #65538]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65538]			optimum	7.0
[Ref.: #65538]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65538]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.855
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65538]		NaCl		growth	0-1	%(w/v)

[Ref.: #65538]	Observation	UV-C radiation resistance
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65538]	adipate ChEBI	-	assimilation
[Ref.: #65538]	D-glucose ChEBI	+	assimilation
[Ref.: #65538]	D-mannitol ChEBI	-	assimilation
[Ref.: #65538]	D-mannose ChEBI	+	assimilation
[Ref.: #65538]	decanoate ChEBI	-	assimilation
[Ref.: #65538]	esculin ChEBI	+	hydrolysis
[Ref.: #65538]	glucose ChEBI	-	fermentation
[Ref.: #65538]	L-arabinose ChEBI	+	assimilation
[Ref.: #65538]	malate ChEBI	-	assimilation
[Ref.: #65538]	maltose ChEBI	+	assimilation
[Ref.: #65538]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65538]	nitrate ChEBI	-	reduction
[Ref.: #65538]	phenylacetate ChEBI	-	assimilation
[Ref.: #65538]	potassium gluconate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65538]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65538]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #65538]	acid phosphatase	+	3.1.3.2
[Ref.: #65538]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65538]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65538]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65538]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65538]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65538]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65538]	arginine dihydrolase	+	3.5.3.6
[Ref.: #65538]	beta-galactosidase	+	3.2.1.23
[Ref.: #65538]	beta-glucosidase	+	3.2.1.21
[Ref.: #65538]	beta-glucuronidase	+	3.2.1.31
[Ref.: #65538]	catalase	+	1.11.1.6
[Ref.: #65538]	cystine arylamidase	+	3.4.11.3
[Ref.: #65538]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65538]	esterase (C 4)	+
[Ref.: #65538]	esterase Lipase (C 8)	+
[Ref.: #65538]	leucine arylamidase	+	3.4.11.1
[Ref.: #65538]	lipase (C 14)	-
[Ref.: #65538]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65538]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65538]	trypsin	-	3.4.21.4
[Ref.: #65538]	urease	+	3.5.1.5
[Ref.: #65538]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65538]

Fatty acid	Percentage
iso-C17:1 U / anteiso-C17:1 B	21.3
C15:0 iso	19.6
C16:1ω7c / C16:1ω6c	8.7
C16:1ω5c	8.7
C17:0 iso 3OH	7.9
C15:0 iso 3OH	4.5
C15:1 iso h / C13:0 3OH	4.2
C14:1ω5c	3.2
C15:0 anteiso	1.9
C17:1ω6c	1.9
C17:1ω7c	1.4
iso-C19:1 I	1.3
C19:0 iso	1.3
C16:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65538]	Sample type/isolated from	wet mud
[Ref.: #65538]	Geographic location (country and/or sea, region)	Boryeong, Chungnam Province
[Ref.: #65538]	Country	Republic of Korea
[Ref.: #65538]	Country ISO 3 Code	KOR
[Ref.: #65538]	Continent	Asia
[Ref.: #65538]	Geographic location	36.3368°/126.6150°
[Ref.: #65538]	Enrichment culture	R2A
[Ref.: #65538]	Enrichment culture duration	4-5 days
[Ref.: #65538]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From wet mud
[Ref.: #67771]	Geographic location (country and/or sea, region)	Boryeong, Chungnam province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.3368°/126.6150°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65538]	16S rRNA gene sequence	KY924849		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Adhaeribacter swui KCTC 52873	GCA_014217805	complete	GenBank	2086471 tax ID	*
[Ref.: #66792]	Adhaeribacter swui strain KCTC 52873	2086471.3	complete	PATRIC	2086471 tax ID	*

[Ref.: #65538]	GC-content	45.9 mol%	real time PCR (RTD-PCR)
[Ref.: #67771]	GC-content	45.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Adhaeribacter swui KCTC 52873 NCBI: GCA_014217805.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Adhaeribacter swui KCTC 52873 NCBI: GCA_014217805.1
[Ref.: #69480]	flagellated	no	94.279	no
[Ref.: #69480]	gram-positive	no	97.839	yes
[Ref.: #69480]	anaerobic	no	99.406	no
[Ref.: #69480]	aerobic	yes	90.582	yes
[Ref.: #69480]	halophile	no	93.865	no
[Ref.: #69480]	spore-forming	no	95.352	no
[Ref.: #69480]	glucose-util	yes	88.484	yes
[Ref.: #69480]	thermophile	no	99.184	yes
[Ref.: #69480]	motile	no	92.635	no
[Ref.: #69480]	glucose-ferment	no	87.814	yes

Availability in culture collections External links

[Ref.: #65538]

Culture collection no.

KCTC 52873, NBRC 112824

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Adhaeribacter arboris sp. nov., and Adhaeribacter pallidiroseus sp. nov., novel bacteria isolated from birch tree (Betula platyphylla).	Kang H, Kim H, Cha I, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004516	2020	*
Phylogeny	Adhaeribacter rhizoryzae sp. nov., a fibrillar matrix-producing bacterium isolated from the rhizosphere of rice plant.	Chhetri G, Kim J, Kim I, Lee B, Jang W, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004422	2020	*
Phylogeny	Adhaeribacter swui sp. nov., isolated from wet mud.	Kim DU, Kim KW, Kang MS, Kim JY, Jang JH, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002631	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65538

Dong-Uk Kim, Kwan Woo Kim, Myung-Suk Kang, Ju-Young Kim, Jun Hwee Jang and Myung Kyum Kim: Adhaeribacter swui sp. nov., isolated from wet mud. IJSEM 68: 1096 - 1100 2018 ( DOI 10.1099/ijsem.0.002631 , PubMed 29458531 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Adhaeribacter swui KCTC 52873

Adhaeribacter swui KCTC 52873

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