Name: Veillonella infantium TSD-88
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158785

Type strain:

Species: Veillonella infantium

Strain Designation: TSD-88, T11011-4

Culture col. no.: JCM 31738, ATCC TSD-88

Strain history: I. Mashima; Sch. of Dentistry, Health Sci. Univ. of Hokkaido, Japan; T11011-4.

NCBI tax ID(s): 1911679 (species)

Section

Veillonella infantium TSD-88 is an anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tongue biofilm of a healthy Thai child aged 10 years.

coccus-shaped
colony-forming
Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella infantium**
	Full Scientific Name (LPSN)	Veillonella infantium Mashima et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65539]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.97

[Ref.: #65539]	Cell length	0.3-0.5 µm

[Ref.: #65539]	Cell shape	coccus-shaped

[Ref.: #65539]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.141

[Ref.: #65539]	Colony size	0.5-2 mm
[Ref.: #65539]	Colony color	greyish white
[Ref.: #65539]	Colony shape	circular
[Ref.: #65539]	Incubation period	5 days
[Ref.: #65539]	Cultivation medium used	BHI blood agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TGY

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Culture medium growth

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Culture medium

TYH

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Culture medium growth

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Culture medium

TGYH

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Culture medium growth

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Culture medium

BHI blood agar

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Culture medium growth

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Culture medium

TFYH

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65539]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.996

[Ref.: #65539]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

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Observation

decolorization of basic fuchsin in Veillonella agar selective medium

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65539]		lactate ChEBI	+	fermentation
[Ref.: #65539]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #65539]	acid phosphatase	+	3.1.3.2
[Ref.: #65539]	catalase	-	1.11.1.6
[Ref.: #65539]	esterase (C 4)	+
[Ref.: #65539]	esterase Lipase (C 8)	+
[Ref.: #65539]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65539]	pyroglutamic acid arylamidase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65539]	Sample type/isolated from	tongue biofilm of a healthy Thai child aged 10 years
[Ref.: #65539]	Sampling date	2015
[Ref.: #65539]	Geographic location (country and/or sea, region)	Mahidol University Faculty of Dentistry
[Ref.: #65539]	Country	Thailand
[Ref.: #65539]	Country ISO 3 Code	THA
[Ref.: #65539]	Continent	Asia
[Ref.: #65539]	Enrichment culture	brain heart infusion
[Ref.: #65539]	Enrichment culture composition	supplemented with 5 %(w/v) defibrinated sheep blood
[Ref.: #65539]	Enrichment culture duration	5 days
[Ref.: #65539]	Enrichment culture temperature	37 ̊C
[Ref.: #65539]	Isolation/enrichment procedure	anaerobic

[Ref.: #67770]	Sample type/isolated from	Tongue biofilm of a Thai child
* marker position based on {}

Isolation sources categories

#Host	#Human	#Child
#Environmental	#Biofilm	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

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Global distribution of 16S sequence LC191258 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	15
Soil Samples	4
Animal Samples	5852
Plant Samples	16
Total Samples	5887

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65539]	16S rRNA gene sequence	LC191258		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella infantium T11011-4	GCA_002959895	contig	GenBank	1911679 tax ID	*
[Ref.: #66792]	Veillonella infantium strain T11011-4	1911679.3	wgs	PATRIC	1911679 tax ID	*
[Ref.: #66792]	Veillonella infantium T11011-4	2882408160	draft	JGI IMG/M	1911679 tax ID	*

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GC-content

38.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Veillonella infantium strain T11011-4 PATRIC: 1911679.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella infantium strain T11011-4 PATRIC: 1911679.3
[Ref.: #69480]	motile	no	91.316	yes
[Ref.: #69480]	gram-positive	no	93.958	yes
[Ref.: #69480]	anaerobic	yes	99.556	yes
[Ref.: #69480]	aerobic	no	97.853	yes
[Ref.: #69480]	halophile	no	80.451	no
[Ref.: #69480]	spore-forming	no	91.248	yes
[Ref.: #69480]	glucose-util	yes	52.715	no
[Ref.: #69480]	flagellated	no	96.79	yes
[Ref.: #69480]	thermophile	no	97.856	no
[Ref.: #69480]	glucose-ferment	yes	53.547	no

Availability in culture collections External links

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Culture collection no.

JCM 31738, ATCC TSD-88

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.	Mashima I, Theodorea CF, Djais AA, Kunihiro T, Kawamura Y, Otomo M, Saitoh M, Tamai R, Kiyoura Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004583	2020	*
Phylogeny	Establishment of a species-specific primer pair for detecting Veillonella infantium based on the 70kDa heat shock protein gene dnaK.	Mashima I, Djais AA, Haase EM, Scannapieco FA, Otomo M, Saitoh M, Nakazawa F	Anaerobe	10.1016/j.anaerobe.2018.06.004	2018	*
Phylogeny	Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child.	Mashima I, Liao YC, Miyakawa H, Theodorea CF, Thawboon B, Thaweboon S, Scannapieco FA, Nakazawa F	Int J Syst Evol Microbiol	10.1099/ijsem.0.002632	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65539

Izumi Mashima, Yu-Chieh Liao, Hiroshi Miyakawa, Citra F. Theodorea, Boonyanit Thawboon, Sroisiri Thaweboon, Frank A. Scannapieco and Futoshi Nakazawa: Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child. IJSEM 68: 1101 - 1106 2018 ( DOI 10.1099/ijsem.0.002632 , PubMed 29458564 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Veillonella infantium strain T11011-4

Veillonella infantium strain T11011-4

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