Veillonella infantium (JCM 31738, TSD-88, T11011-4)

Name: Veillonella infantium (JCM 31738, TSD-88, T11011-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158785

Type strain

Strain Designation TSD-88, T11011-4

Culture col. no. JCM 31738 TSD-88 T11011-4 ATCC TSD-88

NCBI tax ID(s) 1911679

Special Collections JCM Literature strains

History I. Mashima; Sch. of Dentistry, Health Sci. Univ. of Hokkaido, Japan; T11011-4.

Links

Veillonella infantium TSD-88 is an anaerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from tongue biofilm of a healthy Thai child aged 10 years.

Gram-negative coccus-shaped colony-forming anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 288056

ATCC TSD-88,JCM 31738

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Veillonellales

Family Veillonellaceae

Genus Veillonella

Species Veillonella infantium

Full scientific name Veillonella infantium Mashima et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Confidence
65539	negative	0.3-0.5 µm	coccus-shaped
125438	negative			91.081
125439	positive			97.2

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65539	0.5-2 mm	greyish white	circular	5 days	BHI blood agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
65539	TGY
65539	TYH
65539	TGYH
65539	BHI blood agar
65539	TFYH

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65539	anaerobe
125439	microaerophile	96.6

Spore formation

@ref	Spore formation	Confidence
65539
125439		94.6

Observation

65539

Observationdecolorization of basic fuchsin in Veillonella agar selective medium

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65539	24996 ChEBI	lactate	+	fermentation
65539	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
65539	acid phosphatase	+	3.1.3.2
65539	catalase	-	1.11.1.6
65539	esterase (C 4)	+
65539	esterase Lipase (C 8)	+
65539	naphthol-AS-BI-phosphohydrolase	+
65539	pyroglutamic acid arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Environmental	#Biofilm	-
#Host Body-Site	#Oral cavity and airways	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65539	tongue biofilm of a healthy Thai child aged 10 years	2015	Mahidol University Faculty of Dentistry	Thailand	THA	Asia	brain heart infusion	supplemented with 5 %(w/v) defibrinated sheep blood	5 days	37	anaerobic
67770	Tongue biofilm of a Thai child

Taxonmaps

69479

Global distribution of 16S sequence LC191258 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	15
Soil Samples	4
Animal Samples	5852
Plant Samples	16
Total Samples	5887

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM295989v1 assembly for Veillonella infantium T11011-4	contig	GCA_002959895	1911679.3	2882408160	1911679	76.87

16S sequences

@ref	Description	Accession	Database
65539	Veillonella infantium gene for 16S ribosomal RNA, partial sequence	LC191258

GC content

65539

GC-content (mol%)38.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Veillonella infantium T11011-4
NCBI: GCA_002959895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.60	no
125439	motility	BacteriaNetⓘ	no	88.20	no
125439	gram_stain	BacteriaNetⓘ	positive	97.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Veillonella infantium strain T11011-4
PATRIC: 1911679.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.08	yes
125438	anaerobic	anaerobicⓘ	yes	82.81	yes
125438	spore-forming	spore-formingⓘ	no	79.97	yes
125438	thermophilic	thermophileⓘ	no	92.30	no
125438	aerobic	aerobicⓘ	no	88.79	no
125438	flagellated	motile2+ⓘ	no	89.35	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Comparative Pan-Genome Analysis of Oral Veillonella Species.	Mashima I, Liao YC, Lin CH, Nakazawa F, Haase EM, Kiyoura Y, Scannapieco FA.	Microorganisms	10.3390/microorganisms9081775	2021
Phylogeny	Establishment of a species-specific primer pair for detecting Veillonella infantium based on the 70kDa heat shock protein gene dnaK.	Mashima I, Djais AA, Haase EM, Scannapieco FA, Otomo M, Saitoh M, Nakazawa F	Anaerobe	10.1016/j.anaerobe.2018.06.004	2018
Phylogeny	Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.	Mashima I, Theodorea CF, Djais AA, Kunihiro T, Kawamura Y, Otomo M, Saitoh M, Tamai R, Kiyoura Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004583	2020
Phylogeny	Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child.	Mashima I, Liao YC, Miyakawa H, Theodorea CF, Thawboon B, Thaweboon S, Scannapieco FA, Nakazawa F	Int J Syst Evol Microbiol	10.1099/ijsem.0.002632	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65539	Izumi Mashima, Yu-Chieh Liao, Hiroshi Miyakawa, Citra F. Theodorea, Boonyanit Thawboon, Sroisiri Thaweboon, Frank A. Scannapieco and Futoshi Nakazawa: Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child. IJSEM 68: 1101 - 1106 2018 ( DOI 10.1099/ijsem.0.002632 , PubMed 29458564 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Veillonella infantium (JCM 31738, TSD-88, T11011-4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002959895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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