Strain identifier

BacDive ID: 158784

Type strain: Yes

Species: Adhaeribacter swui

Strain Designation: 17mud1-7

Strain history: <- Myung Kyum Kim, Seoul Womens Univ., Korea

NCBI tax ID(s): 2086471 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65538

BacDive-ID: 158784

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Adhaeribacter swui 17mud1-7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from wet mud.

NCBI tax id

  • NCBI tax id: 2086471
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Myung Kyum Kim, Seoul Womens Univ., Korea

doi: 10.13145/bacdive158784.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter swui
  • full scientific name: Adhaeribacter swui Kim et al. 2018

@ref: 65538

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter swui

strain designation: 17mud1-7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
65538negative2.0-2.5 µm0.5-1.0 µmrod-shapedno
67771rod-shapedno
67771negative
69480negative99.999

colony morphology

  • @ref: 65538
  • colony color: pink
  • colony shape: circular
  • medium used: R2A

Culture and growth conditions

culture medium

@refnamegrowth
65538Trypticase Soy Agar (TSA)yes
65538Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
65538positivegrowth18-37
65538positiveoptimum28mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
65538positivegrowth6.0-8.0
65538positiveoptimum7.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65538aerobe
67771aerobe

spore formation

@refspore formationconfidence
69480no99.855
69481no100

halophily

  • @ref: 65538
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %(w/v)

observation

@refobservation
65538UV-C radiation resistance
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6553817128adipate-assimilation
6553827689decanoate-assimilation
6553817634D-glucose+assimilation
6553816899D-mannitol-assimilation
6553816024D-mannose+assimilation
655384853esculin+hydrolysis
6553817234glucose-fermentation
6553830849L-arabinose+assimilation
6553825115malate-assimilation
6553817306maltose+assimilation
65538506227N-acetylglucosamine+assimilation
6553817632nitrate-reduction
6553818401phenylacetate-assimilation
6553832032potassium gluconate-assimilation

metabolite production

  • @ref: 65538
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
65538cytochrome oxidase+1.9.3.1
65538catalase+1.11.1.6
65538arginine dihydrolase+3.5.3.6
65538urease+3.5.1.5
65538beta-galactosidase+3.2.1.23
65538alkaline phosphatase+3.1.3.1
65538esterase (C 4)+
65538esterase Lipase (C 8)+
65538leucine arylamidase+3.4.11.1
65538valine arylamidase+
65538cystine arylamidase+3.4.11.3
65538alpha-chymotrypsin+3.4.21.1
65538acid phosphatase+3.1.3.2
65538naphthol-AS-BI-phosphohydrolase+
655386-phospho-beta-galactosidase+3.2.1.85
65538alpha-galactosidase+3.2.1.22
65538beta-glucuronidase+3.2.1.31
65538alpha-glucosidase+3.2.1.20
65538beta-glucosidase+3.2.1.21
65538N-acetyl-beta-glucosaminidase+3.2.1.52
65538alpha-mannosidase+3.2.1.24
65538lipase (C 14)-
65538trypsin-3.4.21.4
65538alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65538C14:1ω5c3.2
    65538C15:0 iso19.6
    65538C15:0 anteiso1.9
    65538C16:1ω5c8.7
    65538C16:01.1
    65538C15:0 iso 3OH4.5
    65538C17:1ω7c1.4
    65538C17:1ω6c1.9
    65538C17:0 iso 3OH7.9
    65538iso-C19:1 I1.3
    65538C19:0 iso1.3
    65538C15:1 iso h / C13:0 3OH4.2
    65538C16:1ω7c / C16:1ω6c8.7
    65538iso-C17:1 U / anteiso-C17:1 B21.3
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 25
  • incubation time: 3
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
65538wet mudBoryeong, Chungnam ProvinceRepublic of KoreaKORAsia36.3368126.615R2A4-5 days25
67771From wet mudBoryeong, Chungnam provinceRepublic of KoreaKORAsia36.3368126.615

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

Sequence information

16S sequences

  • @ref: 65538
  • description: 16S rRNA gene sequence
  • accession: KY924849
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Adhaeribacter swui KCTC 52873GCA_014217805completencbi2086471
66792Adhaeribacter swui strain KCTC 528732086471.3completepatric2086471

GC content

@refGC-contentmethod
6553845.9real time PCR (RTD-PCR)
6777145.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.279no
gram-positiveno97.839yes
anaerobicno99.406no
aerobicyes90.582yes
halophileno93.865no
spore-formingno95.352no
glucose-utilyes88.484yes
thermophileno99.184yes
motileno92.635no
glucose-fermentno87.814yes

External links

@ref: 65538

culture collection no.: KCTC 52873, NBRC 112824

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29458531Adhaeribacter swui sp. nov., isolated from wet mud.Kim DU, Kim KW, Kang MS, Kim JY, Jang JH, Kim MKInt J Syst Evol Microbiol10.1099/ijsem.0.0026312018Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny32877325Adhaeribacter rhizoryzae sp. nov., a fibrillar matrix-producing bacterium isolated from the rhizosphere of rice plant.Chhetri G, Kim J, Kim I, Lee B, Jang W, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0044222020Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33064067Adhaeribacter arboris sp. nov., and Adhaeribacter pallidiroseus sp. nov., novel bacteria isolated from birch tree (Betula platyphylla).Kang H, Kim H, Cha I, Joh KInt J Syst Evol Microbiol10.1099/ijsem.0.0045162020Bacterial Typing Techniques, Bacteroidetes/*classification/genetics, Base Composition, Betula/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/analysis, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Species SpecificityTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65538Dong-Uk Kim, Kwan Woo Kim, Myung-Suk Kang, Ju-Young Kim, Jun Hwee Jang and Myung Kyum KimAdhaeribacter swui sp. nov., isolated from wet mud10.1099/ijsem.0.002631IJSEM 68: 1096-1100 201829458531
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1