Strain identifier

BacDive ID: 158784

Type strain: Yes

Species: Adhaeribacter swui

Strain Designation: 17mud1-7

Culture col. no.: KCTC 52873, NBRC 112824

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General

@ref: 65538

BacDive-ID: 158784

keywords: colony-forming, rod-shaped, gram-negative, aerobe, Bacteria, 16S sequence

description: Adhaeribacter swui 17mud1-7 is an aerobe, gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from wet mud.

doi: 10.13145/bacdive158784.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter swui
  • full scientific name: Adhaeribacter swui Kim et al. 2018

@ref: 65538

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter swui

strain designation: 17mud1-7

type strain: yes

Morphology

cell morphology

  • @ref: 65538
  • gram stain: negative
  • cell length: 2.0-2.5 µm
  • cell width: 0.5-1.0 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65538
  • colony color: pink
  • colony shape: circular
  • medium used: R2A

Culture and growth conditions

culture medium

@refnamegrowth
65538Trypticase Soy Agar (TSA)yes
65538Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
65538positivegrowth18-37
65538positiveoptimum28mesophilic

culture pH

@refabilitytypepH
65538positivegrowth6.0-8.0
65538positiveoptimum7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 65538
  • oxygen tolerance: aerobe

halophily

  • @ref: 65538
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %(w/v)

observation

  • @ref: 65538
  • observation: UV-C radiation resistance

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6553817128adipate-assimilation
6553827689decanoate-assimilation
6553817634D-glucose+assimilation
6553816899D-mannitol-assimilation
6553816024D-mannose+assimilation
655384853esculin+hydrolysis
6553817234glucose-fermentation
6553830849L-arabinose+assimilation
6553825115malate-assimilation
6553817306maltose+assimilation
65538506227N-acetylglucosamine+assimilation
6553817632nitrate-reduction
6553818401phenylacetate-assimilation
6553832032potassium gluconate-assimilation

metabolite production

  • @ref: 65538
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
65538cytochrome oxidase+1.9.3.1
65538catalase+1.11.1.6
65538arginine dihydrolase+3.5.3.6
65538urease+3.5.1.5
65538beta-galactosidase+3.2.1.23
65538alkaline phosphatase+3.1.3.1
65538esterase (C 4)+
65538esterase Lipase (C 8)+
65538leucine arylamidase+3.4.11.1
65538valine arylamidase+
65538cystine arylamidase+3.4.11.3
65538alpha-chymotrypsin+3.4.21.1
65538acid phosphatase+3.1.3.2
65538naphthol-AS-BI-phosphohydrolase+
655386-phospho-beta-galactosidase+3.2.1.85
65538alpha-galactosidase+3.2.1.22
65538beta-glucuronidase+3.2.1.31
65538alpha-glucosidase+3.2.1.20
65538beta-glucosidase+3.2.1.21
65538N-acetyl-beta-glucosaminidase+3.2.1.52
65538alpha-mannosidase+3.2.1.24
65538lipase (C 14)-
65538trypsin-3.4.21.4
65538alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65538C14:1ω5c3.2
    65538C15:0 iso19.6
    65538C15:0 anteiso1.9
    65538C16:1ω5c8.7
    65538C16:01.1
    65538C15:0 iso 3OH4.5
    65538C17:1ω7c1.4
    65538C17:1ω6c1.9
    65538C17:0 iso 3OH7.9
    65538iso-C19:1 I1.3
    65538C19:0 iso1.3
    65538C15:1 iso h / C13:0 3OH4.2
    65538C16:1ω7c / C16:1ω6c8.7
    65538iso-C17:1 U / anteiso-C17:1 B21.3
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 25
  • incubation time: 3
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 65538
  • sample type: wet mud
  • geographic location: Boryeong, Chungnam Province
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 36.3368
  • longitude: 126.615
  • enrichment culture: R2A
  • enrichment culture duration: 4-5 days
  • enrichment culture temperature: 25

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mud (Sludge)
#Environmental#Terrestrial#Mud (Sludge)

Sequence information

16S sequences

  • @ref: 65538
  • description: 16S rRNA gene sequence
  • accession: KY924849
  • database: nuccore

GC content

  • @ref: 65538
  • GC-content: 45.9
  • method: real time PCR (RTD-PCR)

External links

@ref: 65538

culture collection no.: KCTC 52873, NBRC 112824

Reference

@idauthorstitledoi/urljournal
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
65538Dong-Uk Kim, Kwan Woo Kim, Myung-Suk Kang, Ju-Young Kim, Jun Hwee Jang and Myung Kyum KimAdhaeribacter swui sp. nov., isolated from wet mud10.1099/ijsem.0.002631IJSEM 68: 1096-1100 2018