Name: Flagellimonas indica 3PC125-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158733

Type strain:

Species: Flagellimonas indica

Strain Designation: 3PC125-7

Culture col. no.: MCCC 1A03198, KCTC 52318

Strain history: <- Zongze Shao and Qiliang Lai, The Third istitute Oceanic Administration(SOA)

NCBI tax ID(s): 2081978 (species)

Special Collections

Section

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Flagellimonas indica 3PC125-7 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from deep seawater, collected at a depth of 1400m.

Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flagellimonas*
	Species	**Flagellimonas indica**
	Full Scientific Name (LPSN)	Flagellimonas indica (Zhang et al. 2018) Molinari Novoa et al. 2024

	Synonym	Muricauda indica
	Synonym	Allomuricauda indica

Information on morphological and physiological properties Morphology

[Ref.: #65483]	Gram stain	negative

[Ref.: #65483]	Cell length	1.1-5.3 µm

[Ref.: #65483]	Cell width	0.2-0.6 µm

[Ref.: #65483]	Cell shape	rod-shaped

[Ref.: #65483]	Motility	no

[Ref.: #65483]	Colony size	2-3 mm
[Ref.: #65483]	Colony color	light brown-yellow
[Ref.: #65483]	Incubation period	3 days
[Ref.: #65483]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65483]

Culture medium

Marine agar (MA)

[Ref.: #65483]

Culture medium growth

		Temperature
[Ref.: #65483]	growth	10-41 °C
[Ref.: #65483]	optimum	25-37 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #65483]			optimum	7
[Ref.: #65483]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65483]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65483]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65483]		NaCl		growth	0-10	%(w/v)
[Ref.: #65483]		NaCl		optimum	1-3	%(w/v)

[Ref.: #65483]	Observation	only respiratory quinone is MK-6
[Ref.: #65483]	Observation	major polar lipids are phosphatidylethanolamine, three unknown lipids and six unidentified phospholipids

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65483]	adipate ChEBI	-	assimilation
[Ref.: #65483]	amygdalin ChEBI	+	fermentation
[Ref.: #65483]	arabinose ChEBI	+	fermentation
[Ref.: #65483]	D-glucose ChEBI	-	assimilation
[Ref.: #65483]	D-glucose ChEBI	+	fermentation
[Ref.: #65483]	D-mannitol ChEBI	-	assimilation
[Ref.: #65483]	D-mannose ChEBI	-	assimilation
[Ref.: #65483]	decanoate ChEBI	-	assimilation
[Ref.: #65483]	gelatin ChEBI	-	hydrolysis
[Ref.: #65483]	glucose ChEBI	+	fermentation
[Ref.: #65483]	isocitrate ChEBI	+	assimilation
[Ref.: #65483]	L-arabinose ChEBI	-	assimilation
[Ref.: #65483]	malate ChEBI	-	assimilation
[Ref.: #65483]	maltose ChEBI	-	assimilation
[Ref.: #65483]	mannitol ChEBI	-	fermentation
[Ref.: #65483]	melibiose ChEBI	+	fermentation
[Ref.: #65483]	myo-inositol ChEBI	-	fermentation
[Ref.: #65483]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65483]	nitrate ChEBI	-	reduction
[Ref.: #65483]	phenylacetate ChEBI	-	assimilation
[Ref.: #65483]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65483]	rhamnose ChEBI	+	fermentation
[Ref.: #65483]	sodium citrate ChEBI	-	assimilation
[Ref.: #65483]	sorbitol ChEBI	-	fermentation
[Ref.: #65483]	sucrose ChEBI	+	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65483]	acetoin ChEBI	yes
[Ref.: #65483]	hydrogen sulfide ChEBI	no
[Ref.: #65483]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65483]	acid phosphatase	+	3.1.3.2
[Ref.: #65483]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65483]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65483]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65483]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65483]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65483]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65483]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65483]	beta-galactosidase	+	3.2.1.23
[Ref.: #65483]	beta-glucosidase	+	3.2.1.21
[Ref.: #65483]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65483]	catalase	+	1.11.1.6
[Ref.: #65483]	cystine arylamidase	+	3.4.11.3
[Ref.: #65483]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65483]	esterase (C 4)	+
[Ref.: #65483]	esterase Lipase (C 8)	+
[Ref.: #65483]	gelatinase	-
[Ref.: #65483]	leucine arylamidase	+	3.4.11.1
[Ref.: #65483]	lipase (C 14)	+
[Ref.: #65483]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65483]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65483]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65483]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65483]	trypsin	+	3.4.21.4
[Ref.: #65483]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65483]	urease	-	3.5.1.5
[Ref.: #65483]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65483]

Fatty acid	Percentage
C15:0 iso	29.8
C17:0 iso 3OH	23.2
C15:1 iso G	11.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65483]	Sample type/isolated from	deep seawater, collected at a depth of 1400m
[Ref.: #65483]	Geographic location	-24.5166°/69.9166°
[Ref.: #65483]	Isolation date	December 200
[Ref.: #65483]	Isolation/enrichment procedure	sample was enriched with PAHs and the strains were isolated on 216 l marine agar medium, comprising (g per l seawater) CH3COONa (1.0), Tryptone (10.0), yeast extract (2.0), sodium citrate (0.5), NH4NO3 (0.2) and agar (15) (pH7.5), following the method described by Lai et al.

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Indian Ocean
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65483]	Flagellimonas indica strain 3PC125-7 16S ribosomal RNA gene, partial sequence	KX874649		GenBank ENA

[Ref.: #65483]

GC-content

41.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65483]

Culture collection no.

MCCC 1A03198, KCTC 52318

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.	Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004312	2020	*
Phylogeny	Muricauda indica sp. nov., isolated from deep sea water.	Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002602	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65483

Xiaorong Zhang, Xiupian Liu, Qiliang Lai, Yaping Du, Fengqin Sun, Zongze Shao: Muricauda indica sp. nov., isolated from deep sea water. IJSEM 68: 881 - 885 2018 ( DOI 10.1099/ijsem.0.002602 , PubMed 29458486 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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