Strain identifier

BacDive ID: 158733

Type strain: Yes

Species: Flagellimonas indica

Strain Designation: 3PC125-7

Strain history: <- Zongze Shao and Qiliang Lai, The Third istitute Oceanic Administration(SOA)

NCBI tax ID(s): 2081978 (species)

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General

@ref: 65483

BacDive-ID: 158733

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, rod-shaped

description: Flagellimonas indica 3PC125-7 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from deep seawater, collected at a depth of 1400m.

NCBI tax id

  • NCBI tax id: 2081978
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongze Shao and Qiliang Lai, The Third istitute Oceanic Administration(SOA)

doi: 10.13145/bacdive158733.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flagellimonas
  • species: Flagellimonas indica
  • full scientific name: Flagellimonas indica (Zhang et al. 2018) Molinari Novoa et al. 2024

  • synonyms

    @refsynonym
    20215Muricauda indica
    20215Allomuricauda indica

@ref: 65483

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda indica

strain designation: 3PC125-7

type strain: yes

Morphology

cell morphology

  • @ref: 65483
  • gram stain: negative
  • cell length: 1.1-5.3 µm
  • cell width: 0.2-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65483
  • colony size: 2-3 mm
  • colony color: light brown-yellow
  • incubation period: 3 days
  • medium used: marine agar

Culture and growth conditions

culture medium

  • @ref: 65483
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
65483positivegrowth10-41
65483positiveoptimum25-37
67771positivegrowth28

culture pH

@refabilitytypepHPH range
65483positivegrowth6-9alkaliphile
65483positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65483obligate aerobe
67771aerobe

spore formation

  • @ref: 65483
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65483NaClpositivegrowth0-10 %(w/v)
65483NaClpositiveoptimum1-3 %(w/v)

observation

@refobservation
65483only respiratory quinone is MK-6
65483major polar lipids are phosphatidylethanolamine, three unknown lipids and six unidentified phospholipids

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6548317128adipate-assimilation
6548327613amygdalin+fermentation
6548322599arabinose+fermentation
6548327689decanoate-assimilation
6548317634D-glucose-assimilation
6548317634D-glucose+fermentation
6548316899D-mannitol-assimilation
6548316024D-mannose-assimilation
654835291gelatin-hydrolysis
6548317234glucose+fermentation
6548317268myo-inositol-fermentation
6548316087isocitrate+assimilation
6548330849L-arabinose-assimilation
6548325115malate-assimilation
6548317306maltose-assimilation
6548329864mannitol-fermentation
6548328053melibiose+fermentation
65483506227N-acetylglucosamine-assimilation
6548317632nitrate-reduction
6548318401phenylacetate-assimilation
6548332032potassium gluconate-assimilation
6548326546rhamnose+fermentation
6548353258sodium citrate-assimilation
6548330911sorbitol-fermentation
6548317992sucrose+fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6548315688acetoinyes
6548316136hydrogen sulfideno
6548335581indoleno

enzymes

@refvalueactivityec
65483catalase+1.11.1.6
65483cytochrome oxidase+1.9.3.1
65483alkaline phosphatase+3.1.3.1
65483esterase (C 4)+
65483esterase Lipase (C 8)+
65483valine arylamidase+
65483cystine arylamidase+3.4.11.3
65483leucine arylamidase+3.4.11.1
65483trypsin+3.4.21.4
65483acid phosphatase+3.1.3.2
65483lipase (C 14)+
65483alpha-glucosidase+3.2.1.20
65483alpha-galactosidase+3.2.1.22
65483N-acetyl-beta-glucosaminidase+3.2.1.52
65483alpha-mannosidase+3.2.1.24
65483alpha-chymotrypsin-3.4.21.1
65483beta-glucuronidase-3.2.1.31
65483naphthol-AS-BI-phosphohydrolase-
65483alpha-fucosidase-3.2.1.51
65483beta-glucosidase+3.2.1.21
65483beta-galactosidase+3.2.1.23
65483urease-3.5.1.5
65483arginine dihydrolase-3.5.3.6
65483lysine decarboxylase-4.1.1.18
65483gelatinase-
65483tryptophan deaminase-4.1.99.1
65483ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65483C15:0 iso29.8
    65483C17:0 iso 3OH23.2
    65483C15:1 iso G11.4
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • incubation temperature: 28
  • incubation time: 2
  • software version: Sherlock 6.0B
  • library/peak naming table: TSBA 6.0
  • system: MIS MIDI
  • instrument: model 6850, Agilent Technologies

Isolation, sampling and environmental information

isolation

@refsample typelatitudelongitudeisolation dateisolation proceduregeographic locationcountryorigin.countrycontinent
65483deep seawater, collected at a depth of 1400m-24.516669.9166December 200sample was enriched with PAHs and the strains were isolated on 216 l marine agar medium, comprising (g per l seawater) CH3COONa (1.0), Tryptone (10.0), yeast extract (2.0), sodium citrate (0.5), NH4NO3 (0.2) and agar (15) (pH7.5), following the method described by Lai et al.
67771From seawaterIndian OceanChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 65483
  • description: Flagellimonas indica strain 3PC125-7 16S ribosomal RNA gene, partial sequence
  • accession: KX874649
  • database: nuccore

GC content

  • @ref: 65483
  • GC-content: 41.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65483

culture collection no.: MCCC 1A03198, KCTC 52318

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29458486Muricauda indica sp. nov., isolated from deep sea water.Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0026022018
Phylogeny32721276Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJInt J Syst Evol Microbiol10.1099/ijsem.0.0043122020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65483Xiaorong Zhang, Xiupian Liu, Qiliang Lai, Yaping Du, Fengqin Sun, Zongze ShaoMuricauda indica sp. nov., isolated from deep sea water10.1099/ijsem.0.002602IJSEM 68: 881-885 201829458486
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc