Name: Subsaxibacter sediminis MCC 3191
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158726

Type strain:

Species: Subsaxibacter sediminis

Culture col. no.: MCC 3191, KCTC 42965, LMG 29783, GDMCC 1.1201, ARC 111

Strain history: <- Avinash Sharma, National Centre for Cell Science, India

NCBI tax ID(s): 1663198 (species)

Section

Subsaxibacter sediminis MCC 3191 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from From Arctic sediment, the Midtre Lovenbreen glacier.

Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Subsaxibacter*
	Species	**Subsaxibacter sediminis**
	Full Scientific Name (LPSN)	Subsaxibacter sediminis Sharma et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65474]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65474]	Cell length	0.8-1.0 µm

[Ref.: #65474]	Cell width	0.4-0.5 µm

[Ref.: #65474]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65474]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #65474]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #65474]	Colony color	yellowish-orange
[Ref.: #65474]	Incubation period	7 days
[Ref.: #65474]	Cultivation medium used	nutrient agar

[Ref.: #65474]	Pigment production	no
[Ref.: #65474]	Pigment name	flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65474]

Culture medium

Nutrient agar (NA)

[Ref.: #65474]

Culture medium growth

		Temperature
[Ref.: #65474]	growth	5-20 °C
[Ref.: #65474]	optimum	15 °C
[Ref.: #67771]	growth	15-20 °C

[Ref.: #65474]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #65474]			optimum	7
[Ref.: #65474]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65474]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65474]		NaCl		growth	0-3.5	%(w/v)
[Ref.: #65474]		NaCl		optimum	1	%(w/v)

[Ref.: #65474]	Observation	MK-6 is the major respiratory quinone
[Ref.: #65474]	Observation	Strain ARC111 lacks the ability of capnophilic metabolism
[Ref.: #65474]	Observation	polar lipids are phosphatidylethanolamine, two aminolipid and two unidentified lipids
[Ref.: #65474]	Observation	major polyamine is sym-homo-spermidine
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65474]	adipate ChEBI	-	assimilation
[Ref.: #65474]	arabinose ChEBI	-	assimilation
[Ref.: #65474]	casein	-	hydrolysis
[Ref.: #65474]	D-glucose ChEBI	+	assimilation
[Ref.: #65474]	decanoate ChEBI	-	assimilation
[Ref.: #65474]	esculin ChEBI	+	hydrolysis
[Ref.: #65474]	gluconate ChEBI	-	assimilation
[Ref.: #65474]	glucose ChEBI	-	builds acid from
[Ref.: #65474]	malate ChEBI	-	assimilation
[Ref.: #65474]	maltose ChEBI	+	assimilation
[Ref.: #65474]	mannose ChEBI	-	assimilation
[Ref.: #65474]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65474]	nitrate ChEBI	-	reduction
[Ref.: #65474]	phenylacetate ChEBI	-	assimilation
[Ref.: #65474]	sodium citrate ChEBI	-	assimilation
[Ref.: #65474]	starch ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65474]	acid phosphatase	+	3.1.3.2
[Ref.: #65474]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65474]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65474]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65474]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65474]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65474]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65474]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65474]	beta-galactosidase	-	3.2.1.23
[Ref.: #65474]	beta-glucosidase	-	3.2.1.21
[Ref.: #65474]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65474]	catalase	-	1.11.1.6
[Ref.: #65474]	cystine arylamidase	-	3.4.11.3
[Ref.: #65474]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65474]	esterase	+
[Ref.: #65474]	esterase Lipase (C 8)	-
[Ref.: #65474]	gelatinase	-
[Ref.: #65474]	leucine arylamidase	-	3.4.11.1
[Ref.: #65474]	lipase	-
[Ref.: #65474]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65474]	phosphatase	+
[Ref.: #65474]	trypsin	+	3.4.21.4
[Ref.: #65474]	urease	-	3.5.1.5
[Ref.: #65474]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65474]

Fatty acid	Percentage
C15:0 iso	15.4
C16:0 iso 3OH	10.2
C15:1 iso G	10
C15:0 anteiso	7.1
C16:1 iso H	6.6
C17:0 iso 3OH	6.1
C17:1 anteisoω9c	1.7
C15:0 3OH	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From Arctic sediment, the Midtre Lovenbreen glacier
[Ref.: #67771]	Country	Arctic
[Ref.: #67771]	Continent	Arctic
[Ref.: #67771]	Geographic location	78.9017°/11.8350°

[Ref.: #65474]	Sample type/isolated from	Arctic sediment samples from the Midtre Lov enbreen glacier, Svalbard during the Indian Arctic expedition 2010
[Ref.: #65474]	Geographic location	79.0913°/12.0180°
[Ref.: #65474]	Enrichment culture	nutrient agar (NA) medium (HiMedia)
[Ref.: #65474]	Enrichment culture duration	15 days
[Ref.: #65474]	Enrichment culture temperature	15 ̊C
[Ref.: #65474]	Isolation date	2010
[Ref.: #65474]	Isolation/enrichment procedure	was isolated by spreading a standard dilution on nutrient agar (NA) medium (HiMedia)
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Climate	#Cold	#Polar
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65474]	16S rRNA gene sequence	KP455984		GenBank

[Ref.: #65474]	GC-content	37.3-38.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	37.3-38.3 mol%

Availability in culture collections External links

[Ref.: #65474]

Culture collection no.

MCC 3191, KCTC 42965, LMG 29783, GDMCC 1.1201, ARC 111

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Subsaxibacter sediminis sp. nov., isolated from Arctic glacial sediment and emended description of the genus Subsaxibacter.	Sharma A, Jani K, Feng GD, Karodi P, Vemuluri VR, Zhu HH, Shivaji S, Thite V, Kajale S, Rahi P, Shouche Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002729	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65474

Avinash Sharma, Kunal Jani, Guang-Da Feng, Prachi Karodi, Venkata Ramana Vemuluri, Hong-Hui Zhu, Sisinthy Shivaji, Vishal Thite, Swapnil Kajale, Praveen Rahi, Yogesh Shouche: Subsaxibacter sediminis sp. nov., isolated from Arctic glacial sediment and emended description of the genus Subsaxibacter. IJSEM 68: 1678 - 1682 2018 ( DOI 10.1099/ijsem.0.002729 , PubMed 29561259 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Subsaxibacter sediminis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF