Name: Deinococcus lacus KCTC 52494
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158716

Type strain:

Species: Deinococcus lacus

Culture col. no.: KCTC 52494, KACC 18979, NBRC 112440, IMCC 1711

Strain history: <- Jang-Cheon Cho, Inha Univ.

NCBI tax ID(s): 392561 (species)

Section

Deinococcus lacus KCTC 52494 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from an artificial freshwater pond .

coccus-shaped
Gram-negative
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus lacus**
	Full Scientific Name (LPSN)	Deinococcus lacus Park et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65459]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65459]	Cell length	0.8-1.2 µm

[Ref.: #65459]	Cell shape	coccus-shaped

[Ref.: #65459]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #65459]	Incubation period	5 days
[Ref.: #65459]	Cultivation medium used	Reasoner's 2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65459]

Culture medium

Reasoner's 2A agar

[Ref.: #65459]

Culture medium growth

		Temperature
[Ref.: #65459]	growth	10-30 °C
[Ref.: #65459]	optimum	25 °C
[Ref.: #67771]	growth	20 °C

[Ref.: #65459]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #65459]			optimum	7
[Ref.: #65459]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65459]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65459]		NaCl		growth	0-2.5	%
[Ref.: #65459]		NaCl		optimum	0	%

[Ref.: #65459]	Observation	gamma radiation-resistant
[Ref.: #65459]	Observation	respiratory quinone of the type strain is MK-8
[Ref.: #65459]	Observation	major polar lipids are phosphatidylethanolamine, one unidentified phosphogly-colipid and two unidentified glycolipids
[Ref.: #67771]	Observation	quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65459]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #65459]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #65459]	2-oxopentanoate ChEBI	+	oxidation
[Ref.: #65459]	3-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #65459]	4-hydroxy-L-proline ChEBI	+	oxidation
[Ref.: #65459]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #65459]	casein	+	hydrolysis
[Ref.: #65459]	cellobiose ChEBI	+	oxidation
[Ref.: #65459]	cellulose ChEBI	-	hydrolysis
[Ref.: #65459]	chitin ChEBI	-	hydrolysis
[Ref.: #65459]	D-fructose ChEBI	+	oxidation
[Ref.: #65459]	dextrin ChEBI	+	oxidation
[Ref.: #65459]	dna ChEBI	-	hydrolysis
[Ref.: #65459]	esculin ChEBI	-	hydrolysis
[Ref.: #65459]	glucose ChEBI	-	fermentation
[Ref.: #65459]	glycerol ChEBI	+	oxidation
[Ref.: #65459]	glycogen ChEBI	+	oxidation
[Ref.: #65459]	L-alanine ChEBI	+	oxidation
[Ref.: #65459]	L-proline ChEBI	+	oxidation
[Ref.: #65459]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #65459]	nitrate ChEBI	-	reduction
[Ref.: #65459]	starch ChEBI	-	hydrolysis
[Ref.: #65459]	turanose ChEBI	+	oxidation
[Ref.: #65459]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65459]	tween 40 ChEBI	+	oxidation
[Ref.: #65459]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65459]	tween 80 ChEBI	+	oxidation
[Ref.: #65459]	xylitol ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65459]		indole ChEBI	no
[Ref.: #65459]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65459]	acid phosphatase	-	3.1.3.2
[Ref.: #65459]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65459]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65459]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65459]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65459]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65459]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65459]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65459]	beta-galactosidase	-	3.2.1.23
[Ref.: #65459]	beta-glucosidase	+	3.2.1.21
[Ref.: #65459]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65459]	catalase	+	1.11.1.6
[Ref.: #65459]	cystine arylamidase	-	3.4.11.3
[Ref.: #65459]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65459]	esterase (C 4)	+
[Ref.: #65459]	esterase Lipase (C 8)	+
[Ref.: #65459]	gelatinase	+
[Ref.: #65459]	leucine arylamidase	+	3.4.11.1
[Ref.: #65459]	lipase (C 14)	-
[Ref.: #65459]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65459]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65459]	trypsin	-	3.4.21.4
[Ref.: #65459]	urease	-	3.5.1.5
[Ref.: #65459]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65459]

Fatty acid	Percentage
C17:1ω8c	19.5
C16:0	17.4
C16:1ω6c and/or C16:1ω7c	17.1
C15:1ω6c	10.8
C15:1ω8c	7.9
C18:0	6.9
C17:1ω6c	5
C17:0	4.5
C16:1ω9c	2.5
iso-C17:1ω9c and/or 10-methyl C16:0	1.4
C17:0 iso	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65459]	Sample type/isolated from	an artificial freshwater pond (Inkyong Pond)
[Ref.: #65459]	Sampling date	August 2005
[Ref.: #65459]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #65459]	Country	Republic of Korea
[Ref.: #65459]	Country ISO 3 Code	KOR
[Ref.: #65459]	Continent	Asia
[Ref.: #65459]	Geographic location	37.4498°/126.6560°
[Ref.: #65459]	Enrichment culture	Reasoner's 2A
[Ref.: #65459]	Isolation/enrichment procedure	standard dilution plating method

[Ref.: #67771]	Sample type/isolated from	From artificial freshwater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Inkyung lake, Incheon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.4499°/126.6560°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Engineered	-	-
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ664256 (>99% sequence identity) for Deinococcus lacus subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	10
Animal Samples	83
Plant Samples	11
Total Samples	145

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65459]	16S rRNA gene sequence	DQ664256		GenBank

[Ref.: #65459]	GC-content	59.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	59.1 mol%

Availability in culture collections External links

[Ref.: #65459]

Culture collection no.

KCTC 52494, KACC 18979, NBRC 112440, IMCC 1711

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus lacus sp. nov., a gamma radiation-resistant bacterium isolated from an artificial freshwater pond.	Park M, Song J, Nam GG, Joung Y, Zhao L, Kim MK, Cho JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002683	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65459

Miri Park, Jaeho Song, Gi Gyun Nam, Yochan Joung, Lei Zhao, Min-Kyu Kim, Jang-Cheon Cho: Deinococcus lacus sp. nov., a gamma radiation-resistant bacterium isolated from an artificial freshwater pond. IJSEM 68: 1372 - 1377 2018 ( DOI 10.1099/ijsem.0.002683 , PubMed 29504923 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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