Proteus alimentorum (CGMCC 1.15939, DSM 104685, 08MAS0041)

Name: Proteus alimentorum (CGMCC 1.15939, DSM 104685, 08MAS0041)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158717

Type strain

Strain Designation 08MAS0041

Culture col. no. CGMCC 1.15939 DSM 104685 08MAS0041

NCBI tax ID(s) 1973495

Special Collections DSMZ Literature strains

History <- D. Wang, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; 08MAS0041 <- Y. Wang, Ma'anshan CDC;

Links

Proteus alimentorum 08MAS0041 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from food samples in Ma'anshan city.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408002

DSM 104685

@ref 20215

Last LPSN update 2026-02-09 11:38:24

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Morganellaceae

Genus Proteus

Species Proteus alimentorum

Full scientific name Proteus alimentorum Dai et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
65461	negative	rod-shaped
125439	negative		98
125438	negative		99.985

Multimedia

@ref:	67700
multimedia content:	DSM_104685.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_104685.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67700	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
67700	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
65461	positive	growth	30-45
65461	positive	growth	10
65461	positive	optimum	37
67700	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65461	facultative anaerobe
125439	obligate aerobe	95.5

Spore formation

@ref	Spore formation	Confidence
125439		98.5
125438		90.231

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65461	NaCl	positive	growth	0-6 %(w/v)

Observation

65461

Observationswarm in periodic cycles when grown on LB medium containing 1.5 % agar at 37C for 24 h

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
65461	22599 ChEBI	arabinose	-	fermentation
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
65461	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
65461	37684 ChEBI	mannose	-	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
65461	28053 ChEBI	melibiose	-	fermentation
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
65461	17268 ChEBI	myo-inositol	-	fermentation
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
65461	26546 ChEBI	rhamnose	-	fermentation
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
65461	53258 ChEBI	sodium citrate	+	assimilation
65461	27922 ChEBI	sorbose	-	fermentation
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
65461	17992 ChEBI	sucrose	+	assimilation
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite
65461	28971	ampicillin
65461	2955	azithromycin
65461	478164	cefepime
65461	209807	cefoxitin
65461	29007	ceftriaxone
65461	17698	chloramphenicol
65461	100241	ciprofloxacin
65461	50845	doxycycline
65461	17833	gentamicin
65461	471744	imipenem
65461	6104	kanamycin
65461	100147	nalidixic acid
65461	17076	streptomycin
65461	32161	sulfadimethoxine
65461	102484	sulfisoxazole
65461	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65461	35581 ChEBI	indole
65461	15138 ChEBI	sulfide

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
65461	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
65461	arginine dihydrolase	-	3.5.3.6
65461	beta-galactosidase	-	3.2.1.23
65461	lysine decarboxylase	-	4.1.1.18
65461	ornithine decarboxylase	-	4.1.1.17
65461	phenylalanine deaminase	+	4.3.1.5
65461	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

65461

Fatty acid	Percentage
C16:0	24.8
C16:1ω7c/16:1ω6c	16.5
C18:1ω6c/C18:1ω7c	14.5
Cyclo C17:0	12.6
C16:1 iso I/C14:0 3-OH	10.6
C14:0	9.9
C12:0	3.4
C17:0	1.5
Cyclo C19:0ω8c	1.4

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
67700	-	+	-	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation procedure	Latitude	Longitude
65461	food samples in Ma'anshan city	September 2008	Anhui province	China	CHN	Asia	was placed into 225 ml Gram-negative enrichment broth (Qingdao Hopebio Technology) and enriched for 8 h at 37C and streaked on Salmonella-Shigella (SS) and MacConkey agar plates (Becton Dickinson)
67700	Food (Pork)		Ma’anshan city	China	CHN	Asia		31.6689	118.507 31.6689/118.507

Taxonmaps

69479

Global distribution of 16S sequence KY930949 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM260773v1 assembly for Proteus alimentorum 08MAS0041	scaffold	GCA_002607735	1973495.3	2873863875	1973495	64.19

16S sequences

@ref	Description	Accession	Database
65461	Proteus alimentorum strain 08MAS0041 16S ribosomal RNA gene, partial sequence	KY930948
65461	Proteus sp. 08MAS2209 16S ribosomal RNA gene, partial sequence	KY930949

GC content

@ref	GC-content (mol%)	Method
65461	38	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Proteus alimentorum 08MAS0041
NCBI: GCA_002607735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.50	no
125439	motility	BacteriaNetⓘ	yes	51.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Proteus alimentorum 08MAS0041
NCBI: GCA_002607735.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	yes
125438	anaerobic	anaerobicⓘ	no	92.08	yes
125438	aerobic	aerobicⓘ	no	78.13	yes
125438	spore-forming	spore-formingⓘ	no	90.23	no
125438	thermophilic	thermophileⓘ	no	98.75	yes
125438	flagellated	motile2+ⓘ	yes	74.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China.	Dai H, Wang Y, Fang Y, Huang Z, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002689	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65461	Hang Dai, Yonglu Wang, Yujie Fang, Zhenzhou Huang, Biao Kan, Duochun Wang: Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China. IJSEM 68: 1390 - 1395 2018 ( DOI 10.1099/ijsem.0.002689 , PubMed 29509133 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104685
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Proteus alimentorum (CGMCC 1.15939, DSM 104685, 08MAS0041)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002607735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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