Name: Proteus alimentorum 08MAS0041
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158717

Type strain:

Species: Proteus alimentorum

Strain Designation: 08MAS0041

Culture col. no.: CGMCC 1.15939, DSM 104685

Strain history: <- D. Wang, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; 08MAS0041 <- Y. Wang, Ma'anshan CDC;

NCBI tax ID(s): 1973495 (species)

SI-ID 408002

DSM 104685

Special Collections

Section

When using BacDive for research please cite our paper

Proteus alimentorum 08MAS0041 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from food samples in Ma'anshan city.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Proteus*
	Species	**Proteus alimentorum**
	Full Scientific Name (LPSN)	Proteus alimentorum Dai et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65461]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %98
[Ref.: #125438]	Gram stain	negative Confidence in %99.985

[Ref.: #65461]	Cell shape	rod-shaped

[Ref.: #65461]	Motility	yes

Multimedia content

[Ref.: #67700]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67700]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #67700]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #67700]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #67700]

Culture medium growth

[Ref.: #67700]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #65461]	growth	30-45 °C
[Ref.: #65461]	growth	10 °C
[Ref.: #65461]	optimum	37 °C
[Ref.: #67700]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65461]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %95.5

[Ref.: #125439]	Ability of spore formation	no Confidence in %98.5
[Ref.: #125438]	Ability of spore formation	no Confidence in %90.231

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65461]		NaCl		growth	0-6	%(w/v)

[Ref.: #65461]

Observation

swarm in periodic cycles when grown on LB medium containing 1.5 % agar at 37C for 24 h

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65461]	arabinose ChEBI	-	fermentation
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65461]	glucose ChEBI	+	fermentation
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65461]	mannose ChEBI	-	fermentation
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65461]	melibiose ChEBI	-	fermentation
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65461]	myo-inositol ChEBI	-	fermentation
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65461]	rhamnose ChEBI	-	fermentation
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65461]	sodium citrate ChEBI	+	assimilation
[Ref.: #65461]	sorbose ChEBI	-	fermentation
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65461]	sucrose ChEBI	+	assimilation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #65461]	ampicillin ChEBI		yes
[Ref.: #65461]	azithromycin ChEBI		yes
[Ref.: #65461]	cefepime ChEBI	yes
[Ref.: #65461]	cefoxitin ChEBI	yes
[Ref.: #65461]	ceftriaxone ChEBI	yes
[Ref.: #65461]	chloramphenicol ChEBI	yes
[Ref.: #65461]	ciprofloxacin ChEBI	yes
[Ref.: #65461]	doxycycline ChEBI	yes
[Ref.: #65461]	gentamicin ChEBI	yes
[Ref.: #65461]	imipenem ChEBI	yes
[Ref.: #65461]	kanamycin ChEBI	yes
[Ref.: #65461]	nalidixic acid ChEBI	yes
[Ref.: #65461]	streptomycin ChEBI	yes
[Ref.: #65461]	sulfadimethoxine ChEBI	yes
[Ref.: #65461]	sulfisoxazole ChEBI	yes
[Ref.: #65461]	tetracycline ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65461]		indole ChEBI	yes
[Ref.: #65461]		sulfide ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65461]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65461]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65461]	beta-galactosidase	-	3.2.1.23
[Ref.: #65461]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65461]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65461]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #65461]	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65461]

Fatty acid	Percentage
C16:0	24.8
C16:1ω7c/16:1ω6c	16.5
C18:1ω6c/C18:1ω7c	14.5
Cyclo C17:0	12.6
C16:1 iso I/C14:0 3-OH	10.6
C14:0	9.9
C12:0	3.4
C17:0	1.5
Cyclo C19:0ω8c	1.4

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #67700]	15727	-	+	-	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65461]	Sample type/isolated from	food samples in Ma'anshan city
[Ref.: #65461]	Sampling date	September 2008
[Ref.: #65461]	Geographic location (country and/or sea, region)	Anhui province
[Ref.: #65461]	Country	China
[Ref.: #65461]	Country ISO 3 Code	CHN
[Ref.: #65461]	Continent	Asia
[Ref.: #65461]	Isolation/enrichment procedure	was placed into 225 ml Gram-negative enrichment broth (Qingdao Hopebio Technology) and enriched for 8 h at 37C and streaked on Salmonella-Shigella (SS) and MacConkey agar plates (Becton Dickinson)

[Ref.: #67700]	Sample type/isolated from	Food (Pork)
[Ref.: #67700]	Geographic location (country and/or sea, region)	Ma’anshan city
[Ref.: #67700]	Country	China
[Ref.: #67700]	Country ISO 3 Code	CHN
[Ref.: #67700]	Continent	Asia
[Ref.: #67700]	Geographic location	31.6689°/118.5070°
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY930949 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65461]	Proteus alimentorum strain 08MAS0041 16S ribosomal RNA gene, partial sequence	KY930948		GenBank ENA
[Ref.: #65461]	Proteus sp. 08MAS2209 16S ribosomal RNA gene, partial sequence	KY930949		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Proteus alimentorum 08MAS0041	GCA_002607735	scaffold	GenBank ENA	1973495 tax ID	*
[Ref.: #66792]	Proteus alimentorum 08MAS0041	2873863875	draft	JGI IMG/M	1973495 tax ID	*

[Ref.: #65461]

GC-content

38 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Proteus alimentorum 08MAS0041 NCBI: GCA_002607735.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.985	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.082	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	78.132	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.231	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.75	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	74.104	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Proteus alimentorum 08MAS0041 NCBI: GCA_002607735
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	51.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	95.5

Availability in culture collections External links

[Ref.: #67700]

Culture collection no.

CGMCC 1.15939, DSM 104685

[Ref.: #111330]

SI-ID 408002

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China.	Dai H, Wang Y, Fang Y, Huang Z, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002689	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65461

Hang Dai, Yonglu Wang, Yujie Fang, Zhenzhou Huang, Biao Kan, Duochun Wang: Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China. IJSEM 68: 1390 - 1395 2018 ( DOI 10.1099/ijsem.0.002689 , PubMed 29509133 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104685

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111330

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408002.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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