Name: Pseudomaribius aestuariivivens DBTF-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158715

Type strain:

Species: Pseudomaribius aestuariivivens

Strain Designation: DBTF-15

Culture col. no.: KACC 19431, NBRC 113039

NCBI tax ID(s): 2050951 (species)

Section

Pseudomaribius aestuariivivens DBTF-15 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from a tidal flat sediment collected from Daebu island on the Yellow Sea.

colony-forming
Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudomaribius*
	Species	**Pseudomaribius aestuariivivens**
	Full Scientific Name (LPSN)	Pseudomaribius aestuariivivens Park et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65457]	Gram stain	negative

[Ref.: #65457]	Cell length	0.3-1.6 µm

[Ref.: #65457]	Cell width	0.5-1.0 µm

[Ref.: #65457]	Cell shape	rod-shaped

[Ref.: #65457]	Motility	no

[Ref.: #65457]	Colony size	0.5-0.8 mm
[Ref.: #65457]	Colony color	greyish yellow
[Ref.: #65457]	Colony shape	circular
[Ref.: #65457]	Incubation period	7 days
[Ref.: #65457]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65457]

Culture medium

Marine agar (MA)

[Ref.: #65457]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65457]		growth	30 °C
[Ref.: #65457]		optimum	25-30 °C
[Ref.: #65457]		growth	10 °C
[Ref.: #65457]		growth	37 °C
[Ref.: #65457]	no	growth	40 °C
[Ref.: #65457]	no	growth	4 °C

[Ref.: #65457]	Temperature range	mesophilic
[Ref.: #65457]	Temperature range	psychrophilic
[Ref.: #65457]	Temperature range	mesophilic
[Ref.: #65457]	Temperature range	thermophilic
[Ref.: #65457]	Temperature range	psychrophilic

	Kind of pH		pH
[Ref.: #65457]		optimum	7-8
[Ref.: #65457]		growth	6
[Ref.: #65457]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

[Ref.: #65457]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65457]		NaCl		growth	0.5-5.0	%(w/v)
[Ref.: #65457]		NaCl		optimum	2	%(w/v)

[Ref.: #65457]	Observation	few cells greater than 10 µm in length are observed
[Ref.: #65457]	Observation	Na+ and Mg2+ ions are required for growth
[Ref.: #65457]	Observation	predominant ubiquinone is Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65457]	casein	-	hydrolysis
[Ref.: #65457]	cellobiose ChEBI	-	builds acid from
[Ref.: #65457]	D-fructose ChEBI	-	builds acid from
[Ref.: #65457]	D-galactose ChEBI	-	builds acid from
[Ref.: #65457]	D-glucose ChEBI	-	builds acid from
[Ref.: #65457]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65457]	D-mannose ChEBI	-	builds acid from
[Ref.: #65457]	D-ribose ChEBI	+	builds acid from
[Ref.: #65457]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65457]	D-xylose ChEBI	-	builds acid from
[Ref.: #65457]	esculin ChEBI	+	hydrolysis
[Ref.: #65457]	gelatin ChEBI	-	hydrolysis
[Ref.: #65457]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #65457]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65457]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65457]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #65457]	lactose ChEBI	-	builds acid from
[Ref.: #65457]	maltose ChEBI	-	builds acid from
[Ref.: #65457]	melezitose ChEBI	-	builds acid from
[Ref.: #65457]	melibiose ChEBI	-	builds acid from
[Ref.: #65457]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65457]	nitrate ChEBI	-	reduction
[Ref.: #65457]	raffinose ChEBI	-	builds acid from
[Ref.: #65457]	starch ChEBI	-	hydrolysis
[Ref.: #65457]	sucrose ChEBI	-	builds acid from
[Ref.: #65457]	trehalose ChEBI	-	builds acid from
[Ref.: #65457]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65457]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65457]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65457]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65457]	urea ChEBI	-	hydrolysis
[Ref.: #65457]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65457]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #65457]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65457]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #65457]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #65457]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #65457]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65457]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #65457]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #65457]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #65457]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #65457]	penicillin g ChEBI	yes	20	Unit (disc)
[Ref.: #65457]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #65457]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #65457]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65457]	acid phosphatase	+	3.1.3.2
[Ref.: #65457]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65457]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65457]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65457]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65457]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65457]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65457]	beta-galactosidase	-	3.2.1.23
[Ref.: #65457]	beta-glucosidase	+	3.2.1.21
[Ref.: #65457]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65457]	catalase	+	1.11.1.6
[Ref.: #65457]	cystine arylamidase	-	3.4.11.3
[Ref.: #65457]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65457]	esterase (C 4)	+
[Ref.: #65457]	esterase Lipase (C 8)	+
[Ref.: #65457]	leucine arylamidase	+	3.4.11.1
[Ref.: #65457]	lipase (C 14)	-
[Ref.: #65457]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65457]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65457]	trypsin	-	3.4.21.4
[Ref.: #65457]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65457]

Fatty acid	Percentage
C18:1ω7c	70.7
C17:0	6.4
11-Methyl C18:1ω7c	5.4
Cyclo C19:0ω8c	3.7
C18:0	3
C10:0 3OH	2.3
C17:1ω8c	2
C16:0	1.9
C19:1ω6c and/or cyclo C19:0ω10c	1.4
C17:1ω6c	1.4
C16:1ω7cand/or C16:1ω6c	0.6
C11:0 3OH	0.6

Metadata FA analysis

Reference

[Ref.: #65457]

Fatty acid	Percentage
C18:1ω7c	67.2
11-Methyl C18:1ω7c	7.4
C17:0	6.1
Cyclo C19:0ω8c	5.5
C18:0	3.2
C10:0 3OH	2.3
C16:0	2.1
C17:1ω8c	1.9
C17:1ω6c	1.3
C19:1ω6c and/or cyclo C19:0ω10c	1.1
C16:1ω7c and/or C16:1ω6c	0.7
C11:0 3OH	0.5

Metadata FA analysis

Reference

[Ref.: #65457]

Fatty acid	Percentage
C18:1ω7c	67.5
11-Methyl C18:1ω7c	7.4
Cyclo C19:0ω8c	6.8
C17:0	4.9
C18:0	3.4
C10:0 3OH	2.5
C16:0	2.1
C17:1ω8c	1.6
C19:1ω6c and/or cyclo C19:0ω10c	1.5
C17:1ω6c	1
C16:1ω7c and/or C16:1ω6c	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65457]	Sample type/isolated from	a tidal flat sediment collected from Daebu island on the Yellow Sea
[Ref.: #65457]	Country	Republic of Korea
[Ref.: #65457]	Country ISO 3 Code	KOR
[Ref.: #65457]	Continent	Asia
[Ref.: #65457]	Geographic location	37.2894°/126.5770°
[Ref.: #65457]	Enrichment culture	marine agar 2216
[Ref.: #65457]	Enrichment culture temperature	25 ̊C
[Ref.: #65457]	Isolation/enrichment procedure	was isolated by the standard dilution plating technique on marine agar 2216 (MA; BD Difco) at 25C and cultivated routinely on MA at 30C unless stated otherwise.
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65457]	16S rRNA gene sequence	MG322243		GenBank

[Ref.: #65457]

GC-content

68.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65457]

Culture collection no.

KACC 19431, NBRC 113039

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia.	Barnier C, Clerissi C, Lami R, Intertaglia L, Lebaron P, Grimaud R, Urios L	Syst Appl Microbiol	10.1016/j.syapm.2019.126018	2019	*
Phylogeny	Pseudomaribius aestuariivivens gen. nov., sp. nov., isolated from a tidal flat sediment.	Park S, Park JM, Choi SJ, Choi J, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002677	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65457

Sooyeon Park, Ji-Min Park, Su Jung Choi, Jeehyun Choi, Jung-Hoon Yoon: Pseudomaribius aestuariivivens gen. nov., sp. nov., isolated from a tidal flat sediment. IJSEM 68: 1344 - 1349 2018 ( DOI 10.1099/ijsem.0.002677 , PubMed 29504929 )

* These data were automatically processed and therefore are not curated

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