Name: Saccharopolyspora deserti KCTC 39989
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158633

Type strain:

Species: Saccharopolyspora deserti

Culture col. no.: KCTC 39989, CPCC 204620, SYSU D8010

Strain history: <- Wael Nabil Hozzein, King Saud Univ.

NCBI tax ID(s): 2081980 (species)

Special Collections

Section

Saccharopolyspora deserti KCTC 39989 is an aerobe, halotolerant, spore-forming bacterium that builds substrate mycelia and was isolated from sand samples.

Gram-positive
spore-forming
aerobe
halotolerant
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora deserti**
	Full Scientific Name (LPSN)	Saccharopolyspora deserti Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65356]	Gram stain	positive

[Ref.: #65356]	Multicellular complex forming ability	yes
[Ref.: #65356]	Multicellular complex name	substrate mycelia
[Ref.: #65356]	Multicellular complex color	yellow
[Ref.: #65356]	Multicellular complex further description	Forms well-developed and extensively branched yellow substrate mycelia. Aerial mycelia form long chains of spores

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65356]

Culture medium

ISP2

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

ISP3

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

ISP4

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

ISP5

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

Czapek agar

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

ISP6

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

Nutrient agar (NA)

[Ref.: #65356]

Culture medium growth

[Ref.: #65356]

Culture medium

potato dextrose agar

[Ref.: #65356]

Culture medium growth

		Temperature
[Ref.: #65356]	growth	14-40 °C
[Ref.: #65356]	optimum	28-37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #65356]			optimum	7-8
[Ref.: #65356]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65356]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65356]	Spore description	long chains of spores; spores are non-motile, smooth and oval in shape
[Ref.: #65356]	Type of spore	spore
[Ref.: #65356]	Ability of spore formation	yes

[Ref.: #65356]

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65356]		NaCl		growth	0-22	%(w/v)
[Ref.: #65356]		NaCl		optimum	5-10	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65356]	adenine ChEBI	+	nitrogen source
[Ref.: #65356]	arabinose ChEBI	+	carbon source
[Ref.: #65356]	arginine ChEBI	+	nitrogen source
[Ref.: #65356]	cellobiose ChEBI	+	carbon source
[Ref.: #65356]	cellulose ChEBI	-	hydrolysis
[Ref.: #65356]	cysteine ChEBI	-	nitrogen source
[Ref.: #65356]	disodium fumarate ChEBI	-	carbon source
[Ref.: #65356]	fructose ChEBI	+	carbon source
[Ref.: #65356]	fucose ChEBI	+	carbon source
[Ref.: #65356]	galactose ChEBI	+	carbon source
[Ref.: #65356]	gelatin ChEBI	-	hydrolysis
[Ref.: #65356]	glucose ChEBI	+	carbon source
[Ref.: #65356]	glutamate ChEBI	+	nitrogen source
[Ref.: #65356]	glycerol ChEBI	-	carbon source
[Ref.: #65356]	glycine ChEBI	-	nitrogen source
[Ref.: #65356]	histidine ChEBI	+	nitrogen source
[Ref.: #65356]	hypoxanthine ChEBI	+	nitrogen source
[Ref.: #65356]	lactose ChEBI	-	carbon source
[Ref.: #65356]	lysine ChEBI	+	nitrogen source
[Ref.: #65356]	maltose ChEBI	+	carbon source
[Ref.: #65356]	mannitol ChEBI	-	carbon source
[Ref.: #65356]	mannose ChEBI	+	carbon source
[Ref.: #65356]	methionine ChEBI	-	nitrogen source
[Ref.: #65356]	milk	-	assimilation
[Ref.: #65356]	myo-inositol ChEBI	-	carbon source
[Ref.: #65356]	nitrate ChEBI	+	reduction
[Ref.: #65356]	phenylalanine ChEBI	+	nitrogen source
[Ref.: #65356]	proline ChEBI	+	nitrogen source
[Ref.: #65356]	raffinose ChEBI	-	carbon source
[Ref.: #65356]	rhamnose ChEBI	+	carbon source
[Ref.: #65356]	ribose ChEBI	+	carbon source
[Ref.: #65356]	serine ChEBI	-	nitrogen source
[Ref.: #65356]	sodium pyruvate ChEBI	-	carbon source
[Ref.: #65356]	sodium succinate ChEBI	-	carbon source
[Ref.: #65356]	sorbitol ChEBI	+	carbon source
[Ref.: #65356]	sorbose ChEBI	-	carbon source
[Ref.: #65356]	starch ChEBI	-	hydrolysis
[Ref.: #65356]	sucrose ChEBI	+	carbon source
[Ref.: #65356]	threonine ChEBI	+	nitrogen source
[Ref.: #65356]	tryptophan ChEBI	+	nitrogen source
[Ref.: #65356]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65356]	valine ChEBI	+	nitrogen source
[Ref.: #65356]	xylitol ChEBI	-	carbon source
[Ref.: #65356]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65356]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65356]	catalase	+	1.11.1.6
[Ref.: #65356]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65356]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65356]	Sample type/isolated from	sand samples
[Ref.: #65356]	Country	Saudi Arabia
[Ref.: #65356]	Country ISO 3 Code	SAU
[Ref.: #65356]	Continent	Asia
[Ref.: #65356]	Geographic location	24.2012°/38.2642°
[Ref.: #65356]	Enrichment culture	R2A
[Ref.: #65356]	Enrichment culture composition	supplemented with 5% (w/v) NaCl
[Ref.: #65356]	Enrichment culture duration	7 days
[Ref.: #65356]	Enrichment culture temperature	37 ̊C
[Ref.: #65356]	Isolation/enrichment procedure	The samples were diluted 10-3-fold with sterile distilled water, and a 0.2 ml aliquot of the final suspension was plated on Reasoner's 2 agar

[Ref.: #67771]	Sample type/isolated from	From desert
[Ref.: #67771]	Geographic location (country and/or sea, region)	Riyadh
[Ref.: #67771]	Country	Saudi Arabia
[Ref.: #67771]	Country ISO 3 Code	SAU
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65356]	Saccharopolyspora deserti strain SYSU D8010 16S ribosomal RNA gene, partial sequence	MF480321		GenBank ENA

[Ref.: #65356]

GC-content

69.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65356]

Culture collection no.

KCTC 39989, CPCC 204620, SYSU D8010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert.	Yang ZW, Salam N, Asem MD, Fang BZ, Lan L, Xiao M, Wadaan MAM, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002598	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65356

Zi-Wen Yang, Nimaichand Salam, Mipeshwaree Devi Asem, Bao-Zhu Fang, Liu Lan, Min Xiao, Mohammed A. M. Wadaan, Wael N. Hozzein, Wen-Jun Li: Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert. IJSEM 68: 860 - 864 2018 ( DOI 10.1099/ijsem.0.002598 , PubMed 29458666 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Saccharopolyspora deserti in external resources:
SILVA
BRENDA
PANGAEA
GBIF