Name: Saccharopolyspora deserti KCTC 39989
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158633

Type strain:

Species: Saccharopolyspora deserti

Culture col. no.: KCTC 39989, CPCC 204620, SYSU D8010

Strain history: <- Wael Nabil Hozzein, King Saud Univ.

NCBI tax ID(s): 2081980 (species)

Section

Saccharopolyspora deserti KCTC 39989 is an aerobe, halotolerant, spore-forming bacterium that builds substrate mycelia and was isolated from sand samples.

Gram-positive
spore-forming
aerobe
halotolerant
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora deserti**
	Full Scientific Name (LPSN)	Saccharopolyspora deserti Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65356]	Gram stain	positive

[Ref.: #65356]	Multicellular complex forming ability	yes
[Ref.: #65356]	Multicellular complex name	substrate mycelia
[Ref.: #65356]	Multicellular complex color	yellow
[Ref.: #65356]	Multicellular complex further description	Forms well-developed and extensively branched yellow substrate mycelia. Aerial mycelia form long chains of spores

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2

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Culture medium growth

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Culture medium

ISP3

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Culture medium growth

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Culture medium

ISP4

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Culture medium growth

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Culture medium

ISP5

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Czapek agar

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Culture medium growth

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Culture medium

ISP6

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

potato dextrose agar

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Culture medium growth

		Temperature
[Ref.: #65356]	growth	14-40 °C
[Ref.: #65356]	optimum	28-37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #65356]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65356]			optimum	7-8
[Ref.: #65356]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65356]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65356]	Spore description	long chains of spores; spores are non-motile, smooth and oval in shape
[Ref.: #65356]	Type of spore	spore
[Ref.: #65356]	Ability of spore formation	yes

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Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65356]		NaCl		growth	0-22	%(w/v)
[Ref.: #65356]		NaCl		optimum	5-10	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65356]	adenine ChEBI	+	nitrogen source
[Ref.: #65356]	arabinose ChEBI	+	carbon source
[Ref.: #65356]	arginine ChEBI	+	nitrogen source
[Ref.: #65356]	cellobiose ChEBI	+	carbon source
[Ref.: #65356]	cellulose ChEBI	-	hydrolysis
[Ref.: #65356]	cysteine ChEBI	-	nitrogen source
[Ref.: #65356]	disodium fumarate ChEBI	-	carbon source
[Ref.: #65356]	fructose ChEBI	+	carbon source
[Ref.: #65356]	fucose ChEBI	+	carbon source
[Ref.: #65356]	galactose ChEBI	+	carbon source
[Ref.: #65356]	gelatin ChEBI	-	hydrolysis
[Ref.: #65356]	glucose ChEBI	+	carbon source
[Ref.: #65356]	glutamate ChEBI	+	nitrogen source
[Ref.: #65356]	glycerol ChEBI	-	carbon source
[Ref.: #65356]	glycine ChEBI	-	nitrogen source
[Ref.: #65356]	histidine ChEBI	+	nitrogen source
[Ref.: #65356]	hypoxanthine ChEBI	+	nitrogen source
[Ref.: #65356]	lactose ChEBI	-	carbon source
[Ref.: #65356]	lysine ChEBI	+	nitrogen source
[Ref.: #65356]	maltose ChEBI	+	carbon source
[Ref.: #65356]	mannitol ChEBI	-	carbon source
[Ref.: #65356]	mannose ChEBI	+	carbon source
[Ref.: #65356]	methionine ChEBI	-	nitrogen source
[Ref.: #65356]	milk	-	assimilation
[Ref.: #65356]	myo-inositol ChEBI	-	carbon source
[Ref.: #65356]	nitrate ChEBI	+	reduction
[Ref.: #65356]	phenylalanine ChEBI	+	nitrogen source
[Ref.: #65356]	proline ChEBI	+	nitrogen source
[Ref.: #65356]	raffinose ChEBI	-	carbon source
[Ref.: #65356]	rhamnose ChEBI	+	carbon source
[Ref.: #65356]	ribose ChEBI	+	carbon source
[Ref.: #65356]	serine ChEBI	-	nitrogen source
[Ref.: #65356]	sodium pyruvate ChEBI	-	carbon source
[Ref.: #65356]	sodium succinate ChEBI	-	carbon source
[Ref.: #65356]	sorbitol ChEBI	+	carbon source
[Ref.: #65356]	sorbose ChEBI	-	carbon source
[Ref.: #65356]	starch ChEBI	-	hydrolysis
[Ref.: #65356]	sucrose ChEBI	+	carbon source
[Ref.: #65356]	threonine ChEBI	+	nitrogen source
[Ref.: #65356]	tryptophan ChEBI	+	nitrogen source
[Ref.: #65356]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65356]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65356]	valine ChEBI	+	nitrogen source
[Ref.: #65356]	xylitol ChEBI	-	carbon source
[Ref.: #65356]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65356]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65356]	catalase	+	1.11.1.6
[Ref.: #65356]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65356]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65356]	Sample type/isolated from	sand samples
[Ref.: #65356]	Country	Saudi Arabia
[Ref.: #65356]	Country ISO 3 Code	SAU
[Ref.: #65356]	Continent	Asia
[Ref.: #65356]	Geographic location	24.2012°/38.2642°
[Ref.: #65356]	Enrichment culture	R2A
[Ref.: #65356]	Enrichment culture composition	supplemented with 5% (w/v) NaCl
[Ref.: #65356]	Enrichment culture duration	7 days
[Ref.: #65356]	Enrichment culture temperature	37 ̊C
[Ref.: #65356]	Isolation/enrichment procedure	The samples were diluted 10-3-fold with sterile distilled water, and a 0.2 ml aliquot of the final suspension was plated on Reasoner's 2 agar

[Ref.: #67771]	Sample type/isolated from	From desert
[Ref.: #67771]	Geographic location (country and/or sea, region)	Riyadh
[Ref.: #67771]	Country	Saudi Arabia
[Ref.: #67771]	Country ISO 3 Code	SAU
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65356]	16S rRNA gene sequence	MF480321		GenBank

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GC-content

69.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KCTC 39989, CPCC 204620, SYSU D8010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert.	Yang ZW, Salam N, Asem MD, Fang BZ, Lan L, Xiao M, Wadaan MAM, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002598	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65356

Zi-Wen Yang, Nimaichand Salam, Mipeshwaree Devi Asem, Bao-Zhu Fang, Liu Lan, Min Xiao, Mohammed A. M. Wadaan, Wael N. Hozzein, Wen-Jun Li: Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert. IJSEM 68: 860 - 864 2018 ( DOI 10.1099/ijsem.0.002598 , PubMed 29458666 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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