Name: Chryseobacterium glaciei MTCC 12457
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158632

Type strain:

Species: Chryseobacterium glaciei

Culture col. no.: MTCC 12457, JCM 31156, KACC 19170, IHBB 10212

Strain history: A. Gulati; CSIR-Inst. of Himalayan Bioresour. Technol., India; IHBB 10212.

NCBI tax ID(s): 1685010 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Chryseobacterium glaciei MTCC 12457 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from top-surface soil of a glacier.

colony-forming
Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium glaciei**
	Full Scientific Name (LPSN)	Chryseobacterium glaciei Pal et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65357]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.5
[Ref.: #125439]	Gram stain	negative Confidence in %99.8

[Ref.: #65357]	Cell shape	rod-shaped

[Ref.: #65357]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %90.5

[Ref.: #65357]	Colony color	yellow
[Ref.: #65357]	Colony shape	circular
[Ref.: #65357]	Incubation period	2 days
[Ref.: #65357]	Cultivation medium used	tryptic soy agar

[Ref.: #65357]	Pigment production	yes
[Ref.: #65357]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65357]

Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #65357]	growth	10-28 °C
[Ref.: #65357]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #65357]			optimum	6.5-7
[Ref.: #65357]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %93.8

[Ref.: #65357]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %96.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65357]		NaCl		growth	0-2	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65357]	(S)-lactate ChEBI	-	assimilation
[Ref.: #65357]	1 % sodium lactate	+	assimilation
[Ref.: #65357]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #65357]	casein	+	hydrolysis
[Ref.: #65357]	cellobiose ChEBI	-	assimilation
[Ref.: #65357]	citrate ChEBI	-	assimilation
[Ref.: #65357]	coumarate ChEBI	-	assimilation
[Ref.: #65357]	D-fructose ChEBI	+	assimilation
[Ref.: #65357]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #65357]	D-glucose ChEBI	-	assimilation
[Ref.: #65357]	D-mannose ChEBI	-	assimilation
[Ref.: #65357]	D-mannose ChEBI	+	assimilation
[Ref.: #65357]	D-serine ChEBI	+	assimilation
[Ref.: #65357]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65357]	D-tagatose ChEBI	-	assimilation
[Ref.: #65357]	dextrin ChEBI	+	assimilation
[Ref.: #65357]	gelatin ChEBI	+	assimilation
[Ref.: #65357]	gelatin ChEBI	+	hydrolysis
[Ref.: #65357]	glucose ChEBI	-	fermentation
[Ref.: #65357]	L-arabitol ChEBI	-	assimilation
[Ref.: #65357]	L-galactonic acid gamma-lactone ChEBI	+	assimilation
[Ref.: #65357]	L-histidine ChEBI	-	assimilation
[Ref.: #65357]	L-malate ChEBI	-	assimilation
[Ref.: #65357]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65357]	lysine ChEBI	+	assimilation
[Ref.: #65357]	malonate ChEBI	-	assimilation
[Ref.: #65357]	maltose ChEBI	-	assimilation
[Ref.: #65357]	maltose ChEBI	+	assimilation
[Ref.: #65357]	N-acetyl-L-glutamate ChEBI	+	assimilation
[Ref.: #65357]	nitrate ChEBI	-	reduction
[Ref.: #65357]	ornithine ChEBI	+	assimilation
[Ref.: #65357]	palatinose ChEBI	-	assimilation
[Ref.: #65357]	pectin ChEBI	+	assimilation
[Ref.: #65357]	phenylalanine ChEBI	+	assimilation
[Ref.: #65357]	ribitol ChEBI	-	assimilation
[Ref.: #65357]	succinate ChEBI	-	assimilation
[Ref.: #65357]	sucrose ChEBI	-	assimilation
[Ref.: #65357]	trehalose ChEBI	-	assimilation
[Ref.: #65357]	trehalose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65357]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65357]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65357]	beta-alanine arylamidase pNA	-
[Ref.: #65357]	beta-galactosidase	-	3.2.1.23
[Ref.: #65357]	beta-glucosidase	+	3.2.1.21
[Ref.: #65357]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65357]	beta-N-acetylgalactosaminidase	-
[Ref.: #65357]	beta-xylosidase	-
[Ref.: #65357]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #65357]	glutamyl arylamidase pNA	-
[Ref.: #65357]	glu–gly–arg-arylamidase	-
[Ref.: #65357]	glycin arylamidase	-
[Ref.: #65357]	lipase	-
[Ref.: #65357]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65357]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65357]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65357]	proline-arylamidase	-	3.4.11.5
[Ref.: #65357]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #65357]	tripeptide aminopeptidase	+	3.4.11.4
[Ref.: #65357]	tyrosine arylamidase	+
[Ref.: #65357]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65357]	Sample type/isolated from	top-surface soil of a glacier
[Ref.: #65357]	Geographic location (country and/or sea, region)	Kunzum Pass located in the cold desert of Lahaul-Spiti
[Ref.: #65357]	Country	India
[Ref.: #65357]	Country ISO 3 Code	IND
[Ref.: #65357]	Continent	Asia
[Ref.: #65357]	Geographic location	32.3980°/77.6291°
[Ref.: #65357]	Enrichment culture	1/10 strenght tryptic soy agar
[Ref.: #65357]	Enrichment culture duration	3 days
[Ref.: #65357]	Enrichment culture temperature	28 ̊C
[Ref.: #65357]	Isolation/enrichment procedure	serial soil dilution

[Ref.: #67770]	Sample type/isolated from	Glacier near the Kunzum Pass located in the Lahaul-Spiti in the North-Western Himalayas of India
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR233779 (>99% sequence identity) for Chryseobacterium glaciei subclade from Microbeatlas

Aquatic Samples	494
Soil Samples	193
Animal Samples	850
Plant Samples	69
Total Samples	1606

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65357]	Chryseobacterium glaciei strain IHBB 10212 16S ribosomal RNA gene, partial sequence	KR233779		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chryseobacterium glaciei IHBB 10212	GCA_001648155	complete	GenBank ENA	1685010 tax ID
[Ref.: #66792]	Chryseobacterium sp. IHB B 10212	1685010.5	complete	PATRIC	1685010 tax ID	*
[Ref.: #66792]	Chryseobacterium sp. IHBB 10212	1685010.9	plasmid	PATRIC	1685010 tax ID	*
[Ref.: #66792]	Chryseobacterium sp. IHBB 10212	1685010.8	plasmid	PATRIC	1685010 tax ID	*

[Ref.: #67770]

GC-content

34.08 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium sp. IHB B 10212 PATRIC: 1685010.5
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.863	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.469	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.397	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium sp. IHB B 10212 PATRIC: 1685010.5
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	96.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	73.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.8

Availability in culture collections External links

[Ref.: #65357]

Culture collection no.

MTCC 12457, JCM 31156, KACC 19170, IHBB 10212

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium glaciei sp. nov., isolated from the surface of a glacier in the Indian trans-Himalayas.	Pal M, Kumari M, Kiran S, Salwan R, Mayilraj S, Chhibber S, Gulati A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002600	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65357

Mohinder Pal, Munesh Kumari, Shashi Kiran, Richa Salwan, Shanmugam Mayilraj, Sanjay Chhibber, Arvind Gulati: Chryseobacterium glaciei sp. nov., isolated from the surface of a glacier in the Indian trans-Himalayas. IJSEM 68: 865 - 870 2018 ( DOI 10.1099/ijsem.0.002600 , PubMed 29458480 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Chryseobacterium sp. IHB B 10212

Chryseobacterium sp. IHB B 10212

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