Flavobacterium ovatum (KCTC 52693, MCCC 1K03251, CGMCC 1.16053)

Name: Flavobacterium ovatum (KCTC 52693, MCCC 1K03251, CGMCC 1.16053)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158626

Type strain

Strain Designation W201E

Culture col. no. KCTC 52693 MCCC 1K03251 CGMCC 1.16053 W201E JCM 31872

NCBI tax ID(s) 1928857

Special Collections JCM KCTC Literature strains

History M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; W201E. <- Min Yu, Ocean Univ. of China

Links

Flavobacterium ovatum W201E is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from From antarctic intertidal sand beach.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 288058

KCTC 52693

@ref 20215

Last LPSN update 2026-02-09 11:38:22

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium ovatum

Full scientific name Flavobacterium ovatum Ren et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
65351	negative	0.2-0.3 µm	0.1-0.2 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
65351	0.1-0.2 cm	faintly yellow	3 days	marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
65351	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65351	positive	growth	0-25
65351	positive	optimum	20	psychrophilic
67770	positive	growth	15	psychrophilic
67771	positive	growth	16	psychrophilic

Culture pH

@ref	Ability	Type	PH
65351	positive	optimum	7
65351	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65351	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65351	NaCl	positive	growth	0-7 %(w/v)
65351	NaCl	positive	optimum	2 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65351	62064 ChEBI	2,3-butanediol	-	carbon source
65351	62064 ChEBI	2,3-butanediol	-	energy source
65351	64552 ChEBI	2-hydroxybutyrate	-	carbon source
65351	64552 ChEBI	2-hydroxybutyrate	-	energy source
65351	16763 ChEBI	2-oxobutanoate	-	carbon source
65351	16763 ChEBI	2-oxobutanoate	-	energy source
65351	30916 ChEBI	2-oxoglutarate	-	carbon source
65351	30916 ChEBI	2-oxoglutarate	-	energy source
65351	28644 ChEBI	2-oxopentanoate	-	carbon source
65351	28644 ChEBI	2-oxopentanoate	-	energy source
65351	37054 ChEBI	3-hydroxybutyrate	-	carbon source
65351	37054 ChEBI	3-hydroxybutyrate	-	energy source
65351	18240 ChEBI	4-hydroxy-L-proline	-	carbon source
65351	18240 ChEBI	4-hydroxy-L-proline	-	energy source
65351	16724 ChEBI	4-hydroxybutyrate	-	carbon source
65351	16724 ChEBI	4-hydroxybutyrate	-	energy source
65351	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
65351	18101 ChEBI	4-hydroxyphenylacetic acid	-	energy source
65351	30089 ChEBI	acetate	-	carbon source
65351	30089 ChEBI	acetate	-	energy source
65351	58187 ChEBI	alginate	-	hydrolysis
65351	40585 ChEBI	alpha-cyclodextrin	+	carbon source
65351	40585 ChEBI	alpha-cyclodextrin	+	energy source
65351	17925 ChEBI	alpha-D-glucose	+	carbon source
65351	17925 ChEBI	alpha-D-glucose	+	energy source
65351	36219 ChEBI	alpha-lactose	+	carbon source
65351	36219 ChEBI	alpha-lactose	+	energy source
65351	27613 ChEBI	amygdalin	+	builds acid from
65351	22599 ChEBI	arabinose	+	fermentation
65351	22599 ChEBI	arabinose	+	oxidation
65351	18305 ChEBI	arbutin	-	builds acid from
65351	73706 ChEBI	bromosuccinate	-	carbon source
65351	73706 ChEBI	bromosuccinate	-	energy source
65351	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
65351		casein	-	hydrolysis
65351	17057 ChEBI	cellobiose	-	builds acid from
65351	17057 ChEBI	cellobiose	-	carbon source
65351	17057 ChEBI	cellobiose	-	energy source
65351	17029 ChEBI	chitin	-	hydrolysis
65351	16383 ChEBI	cis-aconitate	-	carbon source
65351	16383 ChEBI	cis-aconitate	-	energy source
65351	16947 ChEBI	citrate	-	carbon source
65351	16947 ChEBI	citrate	-	energy source
65351	15570 ChEBI	D-alanine	-	carbon source
65351	15570 ChEBI	D-alanine	-	energy source
65351	17108 ChEBI	D-arabinose	-	builds acid from
65351	18333 ChEBI	D-arabitol	-	builds acid from
65351	18333 ChEBI	D-arabitol	-	carbon source
65351	18333 ChEBI	D-arabitol	-	energy source
65351	15824 ChEBI	D-fructose	+	builds acid from
65351	15824 ChEBI	D-fructose	+	carbon source
65351	15824 ChEBI	D-fructose	+	energy source
65351	28847 ChEBI	D-fucose	-	builds acid from
65351	15895 ChEBI	D-galactonic acid lactone	-	carbon source
65351	15895 ChEBI	D-galactonic acid lactone	-	energy source
65351	12936 ChEBI	D-galactose	+	builds acid from
65351	12936 ChEBI	D-galactose	+	carbon source
65351	12936 ChEBI	D-galactose	+	energy source
65351	18024 ChEBI	D-galacturonic acid	-	carbon source
65351	18024 ChEBI	D-galacturonic acid	-	energy source
65351	30612 ChEBI	D-glucarate	-	carbon source
65351	30612 ChEBI	D-glucarate	-	energy source
65351	8391 ChEBI	D-gluconate	-	carbon source
65351	8391 ChEBI	D-gluconate	-	energy source
65351	17784 ChEBI	D-glucosaminic acid	-	carbon source
65351	17784 ChEBI	D-glucosaminic acid	-	energy source
65351	17634 ChEBI	D-glucose	+	builds acid from
65351	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
65351	14314 ChEBI	D-glucose 6-phosphate	-	energy source
65351	15748 ChEBI	D-glucuronate	-	carbon source
65351	15748 ChEBI	D-glucuronate	-	energy source
65351	62318 ChEBI	D-lyxose	-	builds acid from
65351	16899 ChEBI	D-mannitol	-	carbon source
65351	16899 ChEBI	D-mannitol	-	energy source
65351	16899 ChEBI	D-mannitol	+	builds acid from
65351	16024 ChEBI	D-mannose	-	carbon source
65351	16024 ChEBI	D-mannose	-	energy source
65351	16024 ChEBI	D-mannose	+	builds acid from
65351	27605 ChEBI	D-psicose	-	carbon source
65351	27605 ChEBI	D-psicose	-	energy source
65351	16988 ChEBI	D-ribose	-	builds acid from
65351	16523 ChEBI	D-serine	-	carbon source
65351	16523 ChEBI	D-serine	-	energy source
65351	17924 ChEBI	D-sorbitol	-	carbon source
65351	17924 ChEBI	D-sorbitol	-	energy source
65351	17924 ChEBI	D-sorbitol	+	builds acid from
65351	16443 ChEBI	D-tagatose	-	builds acid from
65351	65327 ChEBI	D-xylose	+	builds acid from
65351	23652 ChEBI	dextrin	+	carbon source
65351	23652 ChEBI	dextrin	+	energy source
65351	17126 ChEBI	DL-carnitine	-	carbon source
65351	17126 ChEBI	DL-carnitine	-	energy source
65351	16991 ChEBI	dna	-	hydrolysis
65351	17113 ChEBI	erythritol	-	carbon source
65351	17113 ChEBI	erythritol	-	energy source
65351	17113 ChEBI	erythritol	+	builds acid from
65351	4853 ChEBI	esculin	+	hydrolysis
65351		esculin ferric citrate	-	builds acid from
65351	16000 ChEBI	ethanolamine	-	carbon source
65351	16000 ChEBI	ethanolamine	-	energy source
65351	15740 ChEBI	formate	-	carbon source
65351	15740 ChEBI	formate	-	energy source
65351	16813 ChEBI	galactitol	-	builds acid from
65351	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
65351	16865 ChEBI	gamma-aminobutyric acid	-	energy source
65351	5291 ChEBI	gelatin	-	hydrolysis
65351	28066 ChEBI	gentiobiose	-	builds acid from
65351	28066 ChEBI	gentiobiose	-	carbon source
65351	28066 ChEBI	gentiobiose	-	energy source
65351	17234 ChEBI	glucose	+	oxidation
65351	29042 ChEBI	glucose 1-phosphate	-	carbon source
65351	29042 ChEBI	glucose 1-phosphate	-	energy source
65351	32323 ChEBI	glucuronamide	-	carbon source
65351	32323 ChEBI	glucuronamide	-	energy source
65351	17754 ChEBI	glycerol	+	builds acid from
65351	17754 ChEBI	glycerol	+	carbon source
65351	17754 ChEBI	glycerol	+	energy source
65351	14336 ChEBI	glycerol 1-phosphate	+	carbon source
65351	14336 ChEBI	glycerol 1-phosphate	+	energy source
65351	28087 ChEBI	glycogen	+	builds acid from
65351	28087 ChEBI	glycogen	+	carbon source
65351	28087 ChEBI	glycogen	+	energy source
65351	73804 ChEBI	glycyl L-aspartic acid	-	carbon source
65351	73804 ChEBI	glycyl L-aspartic acid	-	energy source
65351	73784 ChEBI	glycyl-l-glutamate	-	carbon source
65351	73784 ChEBI	glycyl-l-glutamate	-	energy source
65351	17596 ChEBI	inosine	-	carbon source
65351	17596 ChEBI	inosine	-	energy source
65351	15443 ChEBI	inulin	-	builds acid from
65351	17240 ChEBI	itaconate	-	carbon source
65351	17240 ChEBI	itaconate	-	energy source
65351	21217 ChEBI	L-alaninamide	-	carbon source
65351	21217 ChEBI	L-alaninamide	-	energy source
65351	16977 ChEBI	L-alanine	-	carbon source
65351	16977 ChEBI	L-alanine	-	energy source
65351	73786 ChEBI	L-alanylglycine	-	carbon source
65351	73786 ChEBI	L-alanylglycine	-	energy source
65351	30849 ChEBI	L-arabinose	-	builds acid from
65351	30849 ChEBI	L-arabinose	-	carbon source
65351	30849 ChEBI	L-arabinose	-	energy source
65351	18403 ChEBI	L-arabitol	-	builds acid from
65351	17196 ChEBI	L-asparagine	-	carbon source
65351	17196 ChEBI	L-asparagine	-	energy source
65351	29991 ChEBI	L-aspartate	-	carbon source
65351	29991 ChEBI	L-aspartate	-	energy source
65351	18287 ChEBI	L-fucose	-	builds acid from
65351	18287 ChEBI	L-fucose	-	carbon source
65351	18287 ChEBI	L-fucose	-	energy source
65351	29985 ChEBI	L-glutamate	-	carbon source
65351	29985 ChEBI	L-glutamate	-	energy source
65351	15971 ChEBI	L-histidine	-	carbon source
65351	15971 ChEBI	L-histidine	-	energy source
65351	15603 ChEBI	L-leucine	-	carbon source
65351	15603 ChEBI	L-leucine	-	energy source
65351	15729 ChEBI	L-ornithine	-	carbon source
65351	15729 ChEBI	L-ornithine	-	energy source
65351	17295 ChEBI	L-phenylalanine	-	carbon source
65351	17295 ChEBI	L-phenylalanine	-	energy source
65351	17203 ChEBI	L-proline	-	carbon source
65351	17203 ChEBI	L-proline	-	energy source
65351	18183 ChEBI	L-pyroglutamic acid	-	carbon source
65351	18183 ChEBI	L-pyroglutamic acid	-	energy source
65351	62345 ChEBI	L-rhamnose	-	builds acid from
65351	62345 ChEBI	L-rhamnose	-	carbon source
65351	62345 ChEBI	L-rhamnose	-	energy source
65351	17115 ChEBI	L-serine	-	carbon source
65351	17115 ChEBI	L-serine	-	energy source
65351	17266 ChEBI	L-sorbose	-	builds acid from
65351	16857 ChEBI	L-threonine	-	carbon source
65351	16857 ChEBI	L-threonine	-	energy source
65351	65328 ChEBI	L-xylose	+	builds acid from
65351	24996 ChEBI	lactate	-	carbon source
65351	24996 ChEBI	lactate	-	energy source
65351	17716 ChEBI	lactose	+	builds acid from
65351	6359 ChEBI	lactulose	+	carbon source
65351	6359 ChEBI	lactulose	+	energy source
65351	15792 ChEBI	malonate	-	carbon source
65351	15792 ChEBI	malonate	-	energy source
65351	17306 ChEBI	maltose	+	builds acid from
65351	17306 ChEBI	maltose	+	carbon source
65351	17306 ChEBI	maltose	+	energy source
65351	29864 ChEBI	mannitol	+	fermentation
65351	6731 ChEBI	melezitose	-	builds acid from
65351	28053 ChEBI	melibiose	-	builds acid from
65351	28053 ChEBI	melibiose	-	carbon source
65351	28053 ChEBI	melibiose	-	energy source
65351	28053 ChEBI	melibiose	+	fermentation
65351	28053 ChEBI	melibiose	+	oxidation
65351	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
65351	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65351	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
65351	320055 ChEBI	methyl beta-D-glucopyranoside	-	energy source
65351	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65351	51850 ChEBI	methyl pyruvate	-	carbon source
65351	51850 ChEBI	methyl pyruvate	-	energy source
65351	75146 ChEBI	monomethyl succinate	-	carbon source
65351	75146 ChEBI	monomethyl succinate	-	energy source
65351	17268 ChEBI	myo-inositol	-	builds acid from
65351	17268 ChEBI	myo-inositol	-	carbon source
65351	17268 ChEBI	myo-inositol	-	energy source
65351	28037 ChEBI	N-acetylgalactosamine	-	carbon source
65351	28037 ChEBI	N-acetylgalactosamine	-	energy source
65351	506227 ChEBI	N-acetylglucosamine	-	carbon source
65351	506227 ChEBI	N-acetylglucosamine	-	energy source
65351	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65351	17632 ChEBI	nitrate	+	reduction
65351	50048 ChEBI	phenylethylamine	-	carbon source
65351	50048 ChEBI	phenylethylamine	-	energy source
65351		potassium 2-dehydro-D-gluconate	-	builds acid from
65351		potassium 5-dehydro-D-gluconate	+	builds acid from
65351	32032 ChEBI	potassium gluconate	-	builds acid from
65351	17272 ChEBI	propionate	-	carbon source
65351	17272 ChEBI	propionate	-	energy source
65351	17148 ChEBI	putrescine	-	carbon source
65351	17148 ChEBI	putrescine	-	energy source
65351	26490 ChEBI	quinate	-	carbon source
65351	26490 ChEBI	quinate	-	energy source
65351	16634 ChEBI	raffinose	-	builds acid from
65351	16634 ChEBI	raffinose	-	carbon source
65351	16634 ChEBI	raffinose	-	energy source
65351	26546 ChEBI	rhamnose	+	oxidation
65351	15963 ChEBI	ribitol	-	carbon source
65351	15963 ChEBI	ribitol	-	energy source
65351	15963 ChEBI	ribitol	-	builds acid from
65351	17814 ChEBI	salicin	+	builds acid from
65351	41865 ChEBI	sebacic acid	-	carbon source
65351	41865 ChEBI	sebacic acid	-	energy source
65351	30911 ChEBI	sorbitol	+	oxidation
65351	28017 ChEBI	starch	+	builds acid from
65351	28017 ChEBI	starch	+	hydrolysis
65351	143136 ChEBI	succinamate	-	carbon source
65351	143136 ChEBI	succinamate	-	energy source
65351	30031 ChEBI	succinate	-	carbon source
65351	30031 ChEBI	succinate	-	energy source
65351	17992 ChEBI	sucrose	-	builds acid from
65351	17992 ChEBI	sucrose	-	carbon source
65351	17992 ChEBI	sucrose	-	energy source
65351	17992 ChEBI	sucrose	+	fermentation
65351	17992 ChEBI	sucrose	+	oxidation
65351	17748 ChEBI	thymidine	-	carbon source
65351	17748 ChEBI	thymidine	-	energy source
65351	27082 ChEBI	trehalose	-	builds acid from
65351	27082 ChEBI	trehalose	-	carbon source
65351	27082 ChEBI	trehalose	-	energy source
65351	32528 ChEBI	turanose	-	builds acid from
65351	32528 ChEBI	turanose	-	carbon source
65351	32528 ChEBI	turanose	-	energy source
65351	53424 ChEBI	tween 20	-	hydrolysis
65351	53423 ChEBI	tween 40	-	carbon source
65351	53423 ChEBI	tween 40	-	energy source
65351	53423 ChEBI	tween 40	-	hydrolysis
65351	53426 ChEBI	tween 80	-	carbon source
65351	53426 ChEBI	tween 80	-	energy source
65351	53426 ChEBI	tween 80	-	hydrolysis
65351	16704 ChEBI	uridine	-	carbon source
65351	16704 ChEBI	uridine	-	energy source
65351	27248 ChEBI	urocanic acid	-	carbon source
65351	27248 ChEBI	urocanic acid	-	energy source
65351	17151 ChEBI	xylitol	-	builds acid from
65351	17151 ChEBI	xylitol	-	carbon source
65351	17151 ChEBI	xylitol	-	energy source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65351	15688 ChEBI	acetoin

Enzymes

@ref	Value	Activity	Ec
65351	acid phosphatase	+	3.1.3.2
65351	alkaline phosphatase	+	3.1.3.1
65351	alpha-glucosidase	+	3.2.1.20
65351	beta-galactosidase	+	3.2.1.23
65351	esterase (C 4)	+
65351	esterase Lipase (C 8)	+
65351	gelatinase	+
65351	leucine arylamidase	+	3.4.11.1
65351	naphthol-AS-BI-phosphohydrolase	+
65351	trypsin	+	3.4.21.4

Fatty acid profile

Metadata FA analysis

@ref

65351

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	20.6
C15:0 iso 3OH	14.1
C15:0 iso	11.2
C15:1 iso G	11.1
C15:0 anteiso	9.9
C16:0 3OH	7.7
C17:0 iso 3OH	7
C16:0	4.7
C15:1ω6c	3.5
C17:1ω6c	2.7
C14:0	2
C13:0 iso	1.8
iso-C13:1	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Geographic location
67771	From antarctic intertidal sand beach		Antarctica	ATA	Australia and Oceania					South Pole, Antarctica(62Â°?11â€²?N 58Â°?59â€²?E)
65351	intertidal sandy beach sample	2015	Antarctica	ATA	Australia and Oceania	marine agar 2216E	7 days	20	The coarse sediment samples were collected with a sterile spoon and resuspended in sterile 0.85 % (w/v) NaCl solution. After a series of dilutions (10-1-10-5), 0.1 ml of each dilution was spread on marine agar 2216E and incubated at 20°C for 7 days.
67770	Intertidal sandy beach in Antarctica

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	INU_Fova_1.0 assembly for Flavobacterium ovatum KCTC 52693	complete	GCA_040703125	1928857	97.91

16S sequences

@ref	Description	Accession	Database
65351	Flavobacterium ovatum strain W201E 16S ribosomal RNA gene, partial sequence	KY352658

GC content

@ref	GC-content (mol%)	Method
65351	34.1	high performance liquid chromatography (HPLC)
67771	34.1

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium lotistagni sp. nov. and Flavobacterium celericrescens sp. nov., isolated from freshwater habitats.	Wu JH, You YX, Young CC, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004682	2021
Phylogeny	Flavobacterium ovatum sp. nov., a marine bacterium isolated from an Antarctic intertidal sandy beach.	Ren Q, Yu M, Li Y, Zhang Y, Shi X, Wu Y, Su Y, Wang Y, Wang X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002586	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65351	Qiaomeng Ren, Min Yu, Yuying Li, Yan Zhang, Xiaochong Shi, Yanhong Wu, Ying Su, Yanan Wang, Xiaolei Wang, Xiao-Hua Zhang: Flavobacterium ovatum sp. nov., a marine bacterium isolated from an Antarctic intertidal sandy beach. IJSEM 68: 795 - 800 2018 ( DOI 10.1099/ijsem.0.002586 , PubMed 29458470 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium ovatum (KCTC 52693, MCCC 1K03251, CGMCC 1.16053)

Name and taxonomic classification