Name: Pseudoponticoccus marisrubri SJ5A-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158575

Type strain:

Species: Pseudoponticoccus marisrubri

Strain Designation: SJ5A-1

Culture col. no.: JCM 19520, ACCC 19863

Strain history: U. Stingl SJ5A-1.

NCBI tax ID(s): 1685382 (species)

Section

Pseudoponticoccus marisrubri SJ5A-1 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from interface-water sample in a depth of 2400-2420 m.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudoponticoccus*
	Species	**Pseudoponticoccus marisrubri**
	Full Scientific Name (LPSN)	Pseudoponticoccus marisrubri (Zhang et al. 2017) Liang et al. 2022

Synonym

Ponticoccus marisrubri

Information on morphological and physiological properties Morphology

[Ref.: #65281]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #65281]	Cell length	0.5-0.7 µm

[Ref.: #65281]	Cell shape	coccus-shaped

[Ref.: #65281]	Motility	no

[Ref.: #65281]	Colony size	0.5 mm
[Ref.: #65281]	Colony color	beige to pale brown
[Ref.: #65281]	Colony shape	circular
[Ref.: #65281]	Incubation period	3 days
[Ref.: #65281]	Cultivation medium used	marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65281]

Culture medium

Marine agar (MA)

[Ref.: #65281]

Culture medium growth

[Ref.: #65281]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65281]	growth	15-40 °C
[Ref.: #65281]	optimum	30-33 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #65281]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65281]			optimum	7-7.5
[Ref.: #65281]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65281]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65281]		NaCl		growth	3-18	%(w/v)
[Ref.: #65281]		NaCl		optimum	9-12	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65281]	acetate ChEBI	-	carbon source
[Ref.: #65281]	acetate ChEBI	-	energy source
[Ref.: #65281]	acetoacetate ChEBI	-	carbon source
[Ref.: #65281]	acetoacetate ChEBI	-	energy source
[Ref.: #65281]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #65281]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #65281]	casein	-	hydrolysis
[Ref.: #65281]	cellobiose ChEBI	-	carbon source
[Ref.: #65281]	cellobiose ChEBI	-	energy source
[Ref.: #65281]	citrate ChEBI	-	carbon source
[Ref.: #65281]	citrate ChEBI	-	energy source
[Ref.: #65281]	D-arabitol ChEBI	-	carbon source
[Ref.: #65281]	D-arabitol ChEBI	-	energy source
[Ref.: #65281]	D-fructose ChEBI	-	carbon source
[Ref.: #65281]	D-fructose ChEBI	-	energy source
[Ref.: #65281]	D-fucose ChEBI	-	carbon source
[Ref.: #65281]	D-fucose ChEBI	-	energy source
[Ref.: #65281]	D-galactose ChEBI	-	carbon source
[Ref.: #65281]	D-galactose ChEBI	-	energy source
[Ref.: #65281]	D-glucose ChEBI	+	builds acid from
[Ref.: #65281]	D-mannitol ChEBI	-	carbon source
[Ref.: #65281]	D-mannitol ChEBI	-	energy source
[Ref.: #65281]	D-mannose ChEBI	+	carbon source
[Ref.: #65281]	D-mannose ChEBI	+	energy source
[Ref.: #65281]	D-serine ChEBI	+	carbon source
[Ref.: #65281]	D-serine ChEBI	+	energy source
[Ref.: #65281]	D-sorbitol ChEBI	+	carbon source
[Ref.: #65281]	D-sorbitol ChEBI	+	energy source
[Ref.: #65281]	dextrin ChEBI	+	carbon source
[Ref.: #65281]	dextrin ChEBI	+	energy source
[Ref.: #65281]	fusidate ChEBI	+	carbon source
[Ref.: #65281]	fusidate ChEBI	+	energy source
[Ref.: #65281]	gelatin ChEBI	+	hydrolysis
[Ref.: #65281]	gentiobiose ChEBI	-	carbon source
[Ref.: #65281]	gentiobiose ChEBI	-	energy source
[Ref.: #65281]	glycerol ChEBI	-	carbon source
[Ref.: #65281]	glycerol ChEBI	-	energy source
[Ref.: #65281]	inosine ChEBI	-	carbon source
[Ref.: #65281]	inosine ChEBI	-	energy source
[Ref.: #65281]	L-alanine ChEBI	-	carbon source
[Ref.: #65281]	L-alanine ChEBI	-	energy source
[Ref.: #65281]	L-arginine ChEBI	-	carbon source
[Ref.: #65281]	L-arginine ChEBI	-	energy source
[Ref.: #65281]	L-aspartate ChEBI	-	carbon source
[Ref.: #65281]	L-aspartate ChEBI	-	energy source
[Ref.: #65281]	L-fucose ChEBI	-	carbon source
[Ref.: #65281]	L-fucose ChEBI	-	energy source
[Ref.: #65281]	L-glutamate ChEBI	-	carbon source
[Ref.: #65281]	L-glutamate ChEBI	-	energy source
[Ref.: #65281]	L-histidine ChEBI	-	carbon source
[Ref.: #65281]	L-histidine ChEBI	-	energy source
[Ref.: #65281]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #65281]	L-pyroglutamic acid ChEBI	-	energy source
[Ref.: #65281]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65281]	L-rhamnose ChEBI	-	energy source
[Ref.: #65281]	lactose ChEBI	-	carbon source
[Ref.: #65281]	lactose ChEBI	-	energy source
[Ref.: #65281]	maltose ChEBI	+	carbon source
[Ref.: #65281]	maltose ChEBI	+	energy source
[Ref.: #65281]	melibiose ChEBI	-	carbon source
[Ref.: #65281]	melibiose ChEBI	-	energy source
[Ref.: #65281]	melibiose ChEBI	+	builds acid from
[Ref.: #65281]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #65281]	methyl beta-D-glucopyranoside ChEBI	-	energy source
[Ref.: #65281]	myo-inositol ChEBI	-	carbon source
[Ref.: #65281]	myo-inositol ChEBI	-	energy source
[Ref.: #65281]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #65281]	N-acetyl-D-mannosamine ChEBI	-	energy source
[Ref.: #65281]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #65281]	N-acetylgalactosamine ChEBI	-	energy source
[Ref.: #65281]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #65281]	N-acetylglucosamine ChEBI	-	energy source
[Ref.: #65281]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #65281]	n-acetylneuraminate ChEBI	-	energy source
[Ref.: #65281]	nitrate ChEBI	-	reduction
[Ref.: #65281]	pectin ChEBI	-	carbon source
[Ref.: #65281]	pectin ChEBI	-	energy source
[Ref.: #65281]	raffinose ChEBI	+	carbon source
[Ref.: #65281]	raffinose ChEBI	+	energy source
[Ref.: #65281]	salicin ChEBI	-	carbon source
[Ref.: #65281]	salicin ChEBI	-	energy source
[Ref.: #65281]	sodium bromate ChEBI	+	carbon source
[Ref.: #65281]	sodium bromate ChEBI	+	energy source
[Ref.: #65281]	sodium butyrate ChEBI	+	carbon source
[Ref.: #65281]	sodium butyrate ChEBI	+	energy source
[Ref.: #65281]	sodium lactate ChEBI	+	carbon source
[Ref.: #65281]	sodium lactate ChEBI	+	energy source
[Ref.: #65281]	stachyose ChEBI	-	carbon source
[Ref.: #65281]	stachyose ChEBI	-	energy source
[Ref.: #65281]	starch ChEBI	-	hydrolysis
[Ref.: #65281]	sucrose ChEBI	+	builds acid from
[Ref.: #65281]	sucrose ChEBI	+	carbon source
[Ref.: #65281]	sucrose ChEBI	+	energy source
[Ref.: #65281]	trehalose ChEBI	-	carbon source
[Ref.: #65281]	trehalose ChEBI	-	energy source
[Ref.: #65281]	tween 40 ChEBI	-	carbon source
[Ref.: #65281]	tween 40 ChEBI	-	energy source
[Ref.: #65281]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65281]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65281]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65281]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65281]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65281]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65281]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #65281]	polymyxin b ChEBI	yes	30	µg (disc)
[Ref.: #65281]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65281]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #65281]	vancomycin ChEBI				yes	30	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #65281]	acid phosphatase	+	3.1.3.2
[Ref.: #65281]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65281]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65281]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65281]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65281]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65281]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65281]	beta-galactosidase	-	3.2.1.23
[Ref.: #65281]	beta-glucosidase	-	3.2.1.21
[Ref.: #65281]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65281]	catalase	+	1.11.1.6
[Ref.: #65281]	cystine arylamidase	-	3.4.11.3
[Ref.: #65281]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65281]	esterase (C 4)	-
[Ref.: #65281]	esterase Lipase (C 8)	-
[Ref.: #65281]	leucine arylamidase	-	3.4.11.1
[Ref.: #65281]	lipase (C 14)	-
[Ref.: #65281]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65281]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65281]	trypsin	-	3.4.21.4
[Ref.: #65281]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	glycogen biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	non-pathway related	73.68	28 of 38
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	oxidative phosphorylation	67.03	61 of 91
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	chlorophyll metabolism	61.11	11 of 18
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	ascorbate metabolism	50	11 of 22
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	arachidonic acid metabolism	50	9 of 18
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65281]	Sample type/isolated from	interface-water sample in a depth of 2400-2420 m
[Ref.: #65281]	Sampling date	2011
[Ref.: #65281]	Geographic location (country and/or sea, region)	Erba Deep brine-sea-water interface in the Red Sea
[Ref.: #65281]	Country	Saudi Arabia
[Ref.: #65281]	Country ISO 3 Code	SAU
[Ref.: #65281]	Continent	Asia
[Ref.: #65281]	Geographic location	20.7300°/38.1833°
[Ref.: #65281]	Enrichment culture	marine agar 2216
[Ref.: #65281]	Enrichment culture duration	1 week
[Ref.: #65281]	Enrichment culture temperature	28 ̊C
[Ref.: #65281]	Isolation/enrichment procedure	5 ml brine was collected (using a sterile syringe) and placed in sterile 30 ml glass tubes with screw caps. The contents were grown in enrichment medium (Marine agar 2216) with 50 % in situ brine at 28°C for 1 week. The cultures were then plated onto Marine 2216 agar plates amended to a final concentration of 10.0 % NaCl and subsequently purified into single colonies.

[Ref.: #67770]	Sample type/isolated from	Brine-seawater interface of the Erba Deep in the Red Sea
[Ref.: #67770]	Country	Saudi Arabia
[Ref.: #67770]	Country ISO 3 Code	SAU
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP726358 (>99% sequence identity) for Ponticoccus marisrubri subclade from Microbeatlas

Aquatic Samples	369
Soil Samples	37
Animal Samples	16
Plant Samples	1
Total Samples	423

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65281]	16S rRNA gene sequence	KP726358		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoponticoccus marisrubri SJ5A-1	GCA_001482405	contig	GenBank	1685382 tax ID
[Ref.: #66792]	Ponticoccus marisrubri strain SJ5A-1	1685382.5	wgs	PATRIC	1685382 tax ID	*
[Ref.: #66792]	Ponticoccus marisrubri SJ5A-1	2724679114	draft	JGI IMG/M	1685382 tax ID	*

[Ref.: #65281]

GC-content

68 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ponticoccus marisrubri strain SJ5A-1 PATRIC: 1685382.5
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ponticoccus marisrubri strain SJ5A-1 PATRIC: 1685382.5
[Ref.: #69480]	motile	no	58.886	yes
[Ref.: #69480]	gram-positive	no	98.554	yes
[Ref.: #69480]	anaerobic	no	97.281	yes
[Ref.: #69480]	aerobic	yes	91.277	yes
[Ref.: #69480]	halophile	yes	86.715	yes
[Ref.: #69480]	spore-forming	no	95.838	no
[Ref.: #69480]	glucose-util	yes	87.05	yes
[Ref.: #69480]	flagellated	no	86.724	yes
[Ref.: #69480]	thermophile	no	97.12	yes
[Ref.: #69480]	glucose-ferment	no	91.625	no

Availability in culture collections External links

[Ref.: #65281]

Culture collection no.

JCM 19520, ACCC 19863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ponticoccus marisrubri sp. nov., a moderately halophilic marine bacterium of the family Rhodobacteraceae.	Zhang G, Haroon MF, Zhang R, Dong X, Liu D, Xiong Q, Xun W, Dong X, Stingl U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002280	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65281

Guishan Zhang, Mohamed Fauzi Haroon, Ruifu Zhang, Xiaoyan Dong, Di Liu, Qin Xiong, Weibing Xun, Xiuzhu Dong, Ulrich Stingl: Ponticoccus marisrubri sp. nov., a moderately halophilic marine bacterium of the family Rhodobacteraceae. IJSEM 67: 4358 - 4364 2017 ( DOI 10.1099/ijsem.0.002280 , PubMed 28984559 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Ponticoccus marisrubri strain SJ5A-1

Ponticoccus marisrubri strain SJ5A-1

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