Name: Colwellia beringensis NB097-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158534

Type strain:

Species: Colwellia beringensis

Strain Designation: NB097-1

Culture col. no.: MCCC 1A11668, KCTC 52554

Strain history: <- Chen Xinhua, Third Institute of Oceanography, State Oceanic Administration

NCBI tax ID(s): 1967665 (species)

Special Collections

Section

Colwellia beringensis NB097-1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from marine sediment sample.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Colwellia*
	Species	**Colwellia beringensis**
	Full Scientific Name (LPSN)	Colwellia beringensis Zhang et al. 2017

Synonym

Cognaticolwellia beringensis

Information on morphological and physiological properties Morphology

[Ref.: #65220]	Gram stain	negative

[Ref.: #65220]	Cell length	0.6-3.0 µm

[Ref.: #65220]	Cell width	0.3-0.6 µm

[Ref.: #65220]	Cell shape	rod-shaped

[Ref.: #65220]	Motility	yes

[Ref.: #65220]	Flagellum arrangement	polar

[Ref.: #65220]	Colony color	white
[Ref.: #65220]	Colony shape	circular
[Ref.: #65220]	Cultivation medium used	marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65220]

Culture medium

Marine agar (MA)

[Ref.: #65220]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65220]		growth	0-25 °C
[Ref.: #65220]		optimum	10-13 °C
[Ref.: #65220]	no	growth	28 °C
[Ref.: #67771]		growth	13 °C

	pH	Kind of pH		pH
[Ref.: #65220]			optimum	7.5-10
[Ref.: #65220]			growth	6-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #65220]	NaCl		growth	1-6	%(w/v)
[Ref.: #65220]	NaCl		optimum	2-3	%(w/v)
[Ref.: #65220]	NaCl	no	growth	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65220]	casein	+	hydrolysis
[Ref.: #65220]	cellobiose ChEBI	-	builds acid from
[Ref.: #65220]	cellobiose ChEBI	-	carbon source
[Ref.: #65220]	citrate ChEBI	-	carbon source
[Ref.: #65220]	D-fructose ChEBI	-	carbon source
[Ref.: #65220]	D-galactose ChEBI	+	carbon source
[Ref.: #65220]	D-xylose ChEBI	-	carbon source
[Ref.: #65220]	esculin ChEBI	+	hydrolysis
[Ref.: #65220]	fructose ChEBI	-	builds acid from
[Ref.: #65220]	gelatin ChEBI	+	hydrolysis
[Ref.: #65220]	glucose ChEBI	+	carbon source
[Ref.: #65220]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65220]	L-arabinose ChEBI	+	carbon source
[Ref.: #65220]	L-malate ChEBI	-	carbon source
[Ref.: #65220]	maltose ChEBI	+	carbon source
[Ref.: #65220]	mannitol ChEBI	-	builds acid from
[Ref.: #65220]	mannitol ChEBI	+	carbon source
[Ref.: #65220]	mannose ChEBI	+	carbon source
[Ref.: #65220]	melibiose ChEBI	+	builds acid from
[Ref.: #65220]	nitrate ChEBI	+	reduction
[Ref.: #65220]	starch ChEBI	+	hydrolysis
[Ref.: #65220]	sucrose ChEBI	+	builds acid from
[Ref.: #65220]	trehalose ChEBI	-	carbon source
[Ref.: #65220]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65220]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65220]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65220]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65220]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65220]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65220]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65220]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #65220]	chloramphenicol ChEBI	yes	50	µg (disc)
[Ref.: #65220]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #65220]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #65220]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #65220]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #65220]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #65220]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #65220]	streptomycin ChEBI	yes	25	µg (disc)
[Ref.: #65220]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65220]	acetoin ChEBI	no
[Ref.: #65220]	hydrogen sulfide ChEBI	no
[Ref.: #65220]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65220]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65220]	acid phosphatase	+	3.1.3.2
[Ref.: #65220]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65220]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65220]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65220]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65220]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65220]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65220]	beta-galactosidase	-	3.2.1.23
[Ref.: #65220]	beta-glucosidase	-	3.2.1.21
[Ref.: #65220]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65220]	catalase	+	1.11.1.6
[Ref.: #65220]	cystine arylamidase	-	3.4.11.3
[Ref.: #65220]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65220]	esterase (C 4)	+
[Ref.: #65220]	esterase Lipase (C 8)	+
[Ref.: #65220]	leucine arylamidase	+	3.4.11.1
[Ref.: #65220]	lipase (C 14)	-
[Ref.: #65220]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65220]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65220]	trypsin	-	3.4.21.4
[Ref.: #65220]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65220]

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	40.7
C16:0	16
C15:1ω8c	6.2
C16:1ω9c	4.5
C17:0	4.3
C18:0	3.1
C11:0 3OH	2.9
C11:0 iso	2.1
C8:0 3-OH	1.9
C10:0	1.8
C14:0	1.3
C10:0 3OH	1.2
C12:0 3OH	1.1
C9:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65220]	Sample type/isolated from	marine sediment sample
[Ref.: #65220]	Geographic location (country and/or sea, region)	Bering sea
[Ref.: #65220]	Country	Pacific Ocean
[Ref.: #65220]	Geographic location	62.5966°/-167.6000°
[Ref.: #65220]	Enrichment culture	marine agar 2216
[Ref.: #65220]	Enrichment culture duration	4 days
[Ref.: #65220]	Enrichment culture temperature	5 ̊C
[Ref.: #65220]	Isolation/enrichment procedure	isolated by the standard dilution-platng technique on marine agar 2216

[Ref.: #67771]	Sample type/isolated from	Marine sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	From Bering Sea
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	62.5967°/-167.6000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG016490 (>99% sequence identity) for Colwellia beringensis from Microbeatlas

Aquatic Samples	1603
Soil Samples	12
Animal Samples	147
Plant Samples	5
Total Samples	1767

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65220]	Cognaticolwellia beringensis strain NB097-1 16S ribosomal RNA gene, partial sequence	MG016490		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Colwellia beringensis NB097-1	2751185795	complete	JGI IMG/M	1967665 tax ID	*

[Ref.: #65220]

GC-content

38.5 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #65220]

Culture collection no.

MCCC 1A11668, KCTC 52554

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colwellia beringensis sp. nov., a psychrophilic bacterium isolated from the Bering Sea.	Zhang C, Guo W, Wang Y, Chen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002423	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65220

Cong Zhang, Wenbin Guo, Yuguang Wang, Xinhua Chen: Colwellia beringensis sp. nov., a psychrophilic bacterium isolated from the Bering Sea. IJSEM 67: 5102 - 5107 2017 ( DOI 10.1099/ijsem.0.002423 , PubMed 29068274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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