Name: Changchengzhania lutea SM1355
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158533

Type strain:

Species: Changchengzhania lutea

Strain Designation: SM1355

Culture col. no.: JCM 30336, CCTCC AB 2014246

Strain history: Y.-Z. Zhang; State Key Lab. of Microb. Technol., Shandong Univ., China; SM1355.

NCBI tax ID(s): 2049305 (species)

Special Collections

Section

Changchengzhania lutea SM1355 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from intertidal sandy sediment sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Changchengzhania*
	Species	**Changchengzhania lutea**
	Full Scientific Name (LPSN)	Changchengzhania lutea Wang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65218]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.95

[Ref.: #65218]	Cell length	1.5-3.0 µm

[Ref.: #65218]	Cell width	0.4-0.6 µm

[Ref.: #65218]	Cell shape	rod-shaped

[Ref.: #65218]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

[Ref.: #65218]	Colony size	2-4 mm
[Ref.: #65218]	Colony color	yellow (carotenoid) pigmented
[Ref.: #65218]	Colony shape	circular
[Ref.: #65218]	Incubation period	3-5 days
[Ref.: #65218]	Cultivation medium used	tryptic soy agar

[Ref.: #65218]	Pigment production	no
[Ref.: #65218]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65218]

Culture medium

tryptic soy agar

[Ref.: #65218]

Culture medium growth

		Temperature
[Ref.: #65218]	growth	4-35 °C
[Ref.: #65218]	optimum	20 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #65218]			optimum	7.5
[Ref.: #65218]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65218]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65218]		NaCl		growth	0.5-7	%(w/v)
[Ref.: #65218]		NaCl		optimum	1-2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65218]	adipate ChEBI	-	growth
[Ref.: #65218]	D-glucose ChEBI	-	growth
[Ref.: #65218]	D-mannitol ChEBI	-	growth
[Ref.: #65218]	D-mannose ChEBI	-	growth
[Ref.: #65218]	decanoate ChEBI	-	growth
[Ref.: #65218]	dna ChEBI	-	hydrolysis
[Ref.: #65218]	esculin ChEBI	+	hydrolysis
[Ref.: #65218]	glucose ChEBI	+	builds acid from
[Ref.: #65218]	L-arabinose ChEBI	-	growth
[Ref.: #65218]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #65218]	malate ChEBI	-	growth
[Ref.: #65218]	maltose ChEBI	-	growth
[Ref.: #65218]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #65218]	nitrate ChEBI	-	reduction
[Ref.: #65218]	phenylacetate ChEBI	-	growth
[Ref.: #65218]	potassium gluconate ChEBI	-	growth
[Ref.: #65218]	sodium citrate ChEBI	-	growth
[Ref.: #65218]	starch ChEBI	-	hydrolysis
[Ref.: #65218]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65218]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65218]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65218]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65218]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65218]	acid phosphatase	+	3.1.3.2
[Ref.: #65218]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65218]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65218]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65218]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65218]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65218]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65218]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65218]	beta-galactosidase	-	3.2.1.23
[Ref.: #65218]	beta-glucosidase	-	3.2.1.21
[Ref.: #65218]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65218]	catalase	+	1.11.1.6
[Ref.: #65218]	cystine arylamidase	+	3.4.11.3
[Ref.: #65218]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65218]	esterase (C 4)	+
[Ref.: #65218]	esterase Lipase (C 8)	+
[Ref.: #65218]	gelatinase	-
[Ref.: #65218]	leucine arylamidase	+	3.4.11.1
[Ref.: #65218]	lipase (C 14)	-
[Ref.: #65218]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65218]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65218]	trypsin	+	3.4.21.4
[Ref.: #65218]	urease	-	3.5.1.5
[Ref.: #65218]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65218]

Fatty acid	Percentage
C15:0 anteiso	16.6
C15:0 iso	14.2
C15:1 iso G	12.6
C17:1 iso ω9c	7.1
C15:0 iso 3OH	7.1
C17:0 iso 3OH	6.6
C17:1 anteiso ω9c	6.1
C17:0 2OH	5.3
C15:1 anteiso A	5.2
C16:1ω7c and/or C15:0 Iso 2OH	4
C15:0	3.3
C16:0 iso 3OH	2.2
C15:0 2-OH	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65218]	Sample type/isolated from	intertidal sandy sediment sample
[Ref.: #65218]	Sampling date	2013-02
[Ref.: #65218]	Geographic location (country and/or sea, region)	seashore area near the Chinese Antarctic Great Wall Station
[Ref.: #65218]	Country	Antarctica
[Ref.: #65218]	Country ISO 3 Code	ATA
[Ref.: #65218]	Continent	Australia and Oceania
[Ref.: #65218]	Geographic location	-62.2172°/-58.9583°
[Ref.: #65218]	Enrichment culture	tryptic soy agar
[Ref.: #65218]	Enrichment culture composition	0.5 % tryptone (Oxoid), 0.1 % yeast extract (Oxoid), 1.5 % agar and artificial seawater
[Ref.: #65218]	Enrichment culture duration	2-4 weeks
[Ref.: #65218]	Enrichment culture temperature	15 ̊C
[Ref.: #65218]	Isolation/enrichment procedure	10 g sample was suspended into 100 ml sterile artificial seawater [prepared using Sigma sea salts (3 %)] and shaken at 100 r.p.m. at 15°C for 2 h. The obtained sus-pension was further serially diluted (10-fold, up to the 10^-6 dilution) using sterile artificial seawater. Aliquots of 200 µl diluted sample (10^-3 - 10^-6 dilution) were then spread onTYS agar.

[Ref.: #67770]	Sample type/isolated from	Antarctic intertidal sediment collected near the Chinese Antarctic Great Wall Station
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65218]	Changchengzhania lutea strain SM1355 16S ribosomal RNA gene, partial sequence	MF040694		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Changchengzhania lutea SM1355	GCA_006974145	complete	GenBank ENA	2049305 tax ID	*
[Ref.: #66792]	Changchengzhania lutea SM1355	2883400621	complete	JGI IMG/M	2049305 tax ID	*

[Ref.: #67770]

GC-content

36.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Changchengzhania lutea SM1355 NCBI: GCA_006974145.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Changchengzhania lutea SM1355 NCBI: GCA_006974145.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.95	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.066	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.035	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.5	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.472	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	yes

Availability in culture collections External links

[Ref.: #65218]

Culture collection no.

JCM 30336, CCTCC AB 2014246

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Changchengzhania lutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from Antarctic intertidal sediment.	Wang N, Xu F, Zhang XY, Chen XL, Qin QL, Zhou BC, Zhang YZ, Shi M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002439	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65218

Ning Wang, Fei Xu, Xi-Ying Zhang, Xiu-Lan Chen, Qi-Long Qin, Bai-Cheng Zhou, Yu-Zhong Zhang, Mei Shi: Changchengzhania lutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from Antarctic intertidal sediment. IJSEM 67: 5187 - 5192 2017 ( DOI 10.1099/ijsem.0.002439 , PubMed 29068279 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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