Flavobacterium amniphilum (BCRC 81006, LMG 29727, KCTC 52443)

Name: Flavobacterium amniphilum (BCRC 81006, LMG 29727, KCTC 52443)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158535

Type strain

Strain Designation KYPY10

Culture col. no. BCRC 81006 LMG 29727 KCTC 52443 KYPY10

NCBI tax ID(s) 1834035

Special Collections KCTC Literature strains

History KCTC <- Wen-Ming Chen, National Kaohsiung Marine Univ.

Links

Flavobacterium amniphilum KYPY10 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from water sample.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366370

LMG 29727,KCTC 52443,BCRC 81006

@ref 20215

Last LPSN update 2026-05-29 08:43:59

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium amniphilum

Full scientific name Flavobacterium amniphilum Sheu et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
65223	negative	2.5-3.0 µm	0.2-0.3 µm	rod-shaped	gliding
125438						94
125438	negative					98.891

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65223	1.0-1.8 mm	light yellow	circular	2 days	R2A

Pigmentation

@ref	Production	Name
65223		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
65223	Nutrient agar (NA)
65223	Reasoner's 2A agar (R2A)
65223	LB (Luria-Bertani) MEDIUM
65223	tripticase soy agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65223	positive	growth	20-30
65223	positive	optimum	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
65223	positive	optimum	6
65223	positive	growth	6-7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65223	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65223	NaCl	positive	growth	0-0.2 %(w/v)
65223	NaCl	positive	optimum	0 %(w/v)

Observation

@ref	Observation
65223	colonies do not adhere to the agar
65223	Congo red is not absorbed by colonies

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65223	64552 ChEBI	2-hydroxybutyrate	+	respiration
65223	17128 ChEBI	adipate	-	growth
65223	40585 ChEBI	alpha-cyclodextrin	+	respiration
65223	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
65223		casein	+	hydrolysis
65223	17029 ChEBI	chitin	-	hydrolysis
65223	17634 ChEBI	D-glucose	-	builds acid from
65223	17634 ChEBI	D-glucose	-	growth
65223	16899 ChEBI	D-mannitol	-	growth
65223	16024 ChEBI	D-mannose	-	growth
65223	27689 ChEBI	decanoate	-	growth
65223	16991 ChEBI	dna	-	hydrolysis
65223	4853 ChEBI	esculin	-	hydrolysis
65223	5291 ChEBI	gelatin	+	hydrolysis
65223	28087 ChEBI	glycogen	+	respiration
65223	30849 ChEBI	L-arabinose	-	growth
65223	29985 ChEBI	L-glutamate	+	respiration
65223	17203 ChEBI	L-proline	+	respiration
65223	17895 ChEBI	L-tyrosine	+	hydrolysis
65223	61995 ChEBI	lecithin	-	hydrolysis
65223	25115 ChEBI	malate	-	growth
65223	17306 ChEBI	maltose	-	growth
65223	17306 ChEBI	maltose	+	respiration
65223	506227 ChEBI	N-acetylglucosamine	-	growth
65223	17632 ChEBI	nitrate	-	reduction
65223	17309 ChEBI	pectin	-	hydrolysis
65223	18401 ChEBI	phenylacetate	-	growth
65223	32032 ChEBI	potassium gluconate	-	growth
65223	53258 ChEBI	sodium citrate	-	growth
65223	28017 ChEBI	starch	+	hydrolysis
65223	53424 ChEBI	tween 20	-	hydrolysis
65223	53423 ChEBI	tween 40	-	hydrolysis
65223	53425 ChEBI	tween 60	+	hydrolysis
65223	53426 ChEBI	tween 80	+	hydrolysis
65223	16704 ChEBI	uridine	+	respiration

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Sensitivity conc.
65223	28971		ampicillin	10 µg (disc)
65223	17698		chloramphenicol	30 µg (disc)
65223	17833		gentamicin	10 µg (disc)
65223	6104		kanamycin	30 µg (disc)
65223	100147		nalidixic acid	30 µg (disc)
65223	28368		novobiocin	30 µg (disc)
65223	18208		penicillin g	10 Unit (disc)
65223	28077		rifampicin	5 µg (disc)
65223	17076		streptomycin	10 µg (disc)
65223	9332	26	sulfamethoxazole	23.75 µg (disc)
65223	27902		tetracycline	30 µg (disc)
65223	45924	26	trimethoprim	1.25 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65223	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65223	acid phosphatase	+	3.1.3.2
65223	alkaline phosphatase	+	3.1.3.1
65223	alpha-chymotrypsin	-	3.4.21.1
65223	alpha-fucosidase	-	3.2.1.51
65223	alpha-galactosidase	-	3.2.1.22
65223	alpha-glucosidase	-	3.2.1.20
65223	alpha-mannosidase	-	3.2.1.24
65223	arginine dihydrolase	-	3.5.3.6
65223	beta-galactosidase	-	3.2.1.23
65223	beta-glucosidase	-	3.2.1.21
65223	beta-glucuronidase	-	3.2.1.31
65223	catalase	+	1.11.1.6
65223	cystine arylamidase	+	3.4.11.3
65223	cytochrome oxidase	+	1.9.3.1
65223	esterase (C 4)	+
65223	esterase Lipase (C 8)	+
65223	leucine arylamidase	+	3.4.11.1
65223	lipase	-
65223	lipase (C 14)	-
65223	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65223	naphthol-AS-BI-phosphohydrolase	+
65223	trypsin	-	3.4.21.4
65223	urease	-	3.5.1.5
65223	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65223	water sample	Funglin Stream in the vicinity of Hualien County	Taiwan, Province of China	TWN	Asia	23.7594	121.447 23.7594/121.447	R2A agar	3 days	25	aerobic incubation
67771	From river	Hualien County	Taiwan, Province of China	TWN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2363484v1 assembly for Flavobacterium amniphilum KYPY10	scaffold	GCA_023634845	1834035.3	8046086645	1834035	63

16S sequences

@ref	Description	Accession	Database
65223	Flavobacterium sp. KYPY10 partial 16S rRNA gene, strain KYPY10	LT555403

GC content

@ref	GC-content (mol%)	Method
65223	41	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium amniphilum KYPY10
NCBI: GCA_023634845.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.89	yes
125438	anaerobic	anaerobicⓘ	no	97.33	yes
125438	aerobic	aerobicⓘ	yes	83.52	yes
125438	spore-forming	spore-formingⓘ	no	89.74	no
125438	thermophilic	thermophileⓘ	no	96.39	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium amnicola sp. nov., isolated from a sub-tropical stream.	Sheu SY, Guo YP, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003463	2019
Phylogeny	Flavobacterium amniphilum sp. nov., isolated from a stream.	Sheu SY, Su CL, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002443	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65223	Shih-Yi Sheu, Ching-Ling Su, Soon-Wo Kwon, Wen-Ming Chen: Flavobacterium amniphilum sp. nov., isolated from a stream. IJSEM 67: 5179 - 5186 2017 ( DOI 10.1099/ijsem.0.002443 , PubMed 29072560 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Flavobacterium amniphilum (BCRC 81006, LMG 29727, KCTC 52443)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023634845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media