Name: Deinococcus fonticola FeSDHB5-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158506

Type strain:

Species: Deinococcus fonticola

Strain Designation: FeSDHB5-19

Culture col. no.: DSM 106917, NCAIM B.02639

Strain history: <- J. Makk, Eötvös Loránd Univ. Budapest, Hungary; FeSDHB5-19

NCBI tax ID(s): 2528713 (species)

SI-ID 405447

DSM 106917

Section

Deinococcus fonticola FeSDHB5-19 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from biofilm sample of thermal spring.

coccus-shaped
colony-forming
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus fonticola**
	Full Scientific Name (LPSN)	Deinococcus fonticola Makk et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67935]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.263

[Ref.: #67935]	Cell length	1.0-2.0 µm

[Ref.: #67935]	Cell shape	coccus-shaped

[Ref.: #67935]	Motility	no

[Ref.: #67935]	Colony size	4.0-5.0 mm
[Ref.: #67935]	Colony color	pale pink
[Ref.: #67935]	Colony shape	circular
[Ref.: #67935]	Incubation period	3 days
[Ref.: #67935]	Cultivation medium used	TGY agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65182]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #65182]

Culture medium growth

[Ref.: #65182]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65182]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65182]	growth	28 °C
[Ref.: #67935]	growth	10-32 °C
[Ref.: #67935]	optimum	28 °C

[Ref.: #65182]	Temperature range	mesophilic
[Ref.: #67935]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67935]			optimum	6.5-7.5
[Ref.: #67935]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67935]

Oxygen tolerance

aerobe

[Ref.: #67935]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.585
[Ref.: #69481]	Ability of spore formation	no Confidence in %96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67935]		NaCl		growth	0.0-1.5	%
[Ref.: #67935]		NaCl		optimum	0.0-0.5	%

[Ref.: #67935]	Observation	The polar lipid profile is dominated by several unidentified glycolipids and phosphoglycolipids
[Ref.: #67935]	Observation	The predominant respiratory quinone is MK-8
[Ref.: #67935]	Observation	The cell-wall peptidoglycan contains l-ornithine as the diagnostic diamino acid and corresponds to type A3ß l-Orn-Gly1-2
[Ref.: #67935]	Observation	The whole-cell sugars are glucose and low amounts of galactose
[Ref.: #67935]	Observation	Cells occur singly or form pairs or tetrads
[Ref.: #67935]	Observation	Cells show strong gamma and UV radiation resistance (D10<8?kGy and (D10~800 Jm-2)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67935]	amygdalin ChEBI	-	assimilation
[Ref.: #67935]	amygdalin ChEBI	-	builds acid from
[Ref.: #67935]	arbutin ChEBI	+	builds acid from
[Ref.: #67935]	casein	-	hydrolysis
[Ref.: #67935]	cellobiose ChEBI	-	builds acid from
[Ref.: #67935]	citrate ChEBI	-	assimilation
[Ref.: #67935]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67935]	D-arabitol ChEBI	-	builds acid from
[Ref.: #67935]	D-fructose ChEBI	-	builds acid from
[Ref.: #67935]	D-fucose ChEBI	-	builds acid from
[Ref.: #67935]	D-galactose ChEBI	-	builds acid from
[Ref.: #67935]	D-glucose ChEBI	-	fermentation
[Ref.: #67935]	D-glucose ChEBI	-	oxidation
[Ref.: #67935]	D-glucose ChEBI	-	assimilation
[Ref.: #67935]	D-glucose ChEBI	-	builds acid from
[Ref.: #67935]	D-lyxose ChEBI	-	builds acid from
[Ref.: #67935]	D-mannitol ChEBI	-	assimilation
[Ref.: #67935]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67935]	D-mannose ChEBI	-	builds acid from
[Ref.: #67935]	D-ribose ChEBI	-	builds acid from
[Ref.: #67935]	D-sorbitol ChEBI	-	assimilation
[Ref.: #67935]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67935]	D-tagatose ChEBI	-	builds acid from
[Ref.: #67935]	D-xylose ChEBI	-	builds acid from
[Ref.: #67935]	erythritol ChEBI	-	builds acid from
[Ref.: #67935]	esculin ChEBI	-	hydrolysis
[Ref.: #67935]	esculin ferric citrate	-	builds acid from
[Ref.: #67935]	galactitol ChEBI	-	builds acid from
[Ref.: #67935]	gelatin ChEBI	-	hydrolysis
[Ref.: #67935]	gelatin ChEBI	+	hydrolysis
[Ref.: #67935]	gentiobiose ChEBI	-	builds acid from
[Ref.: #67935]	glycerol ChEBI	-	builds acid from
[Ref.: #67935]	glycogen ChEBI	-	builds acid from
[Ref.: #67935]	inulin ChEBI	-	builds acid from
[Ref.: #67935]	L-arabinose ChEBI	-	assimilation
[Ref.: #67935]	L-arabinose ChEBI	-	builds acid from
[Ref.: #67935]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67935]	L-fucose ChEBI	-	builds acid from
[Ref.: #67935]	L-rhamnose ChEBI	-	assimilation
[Ref.: #67935]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67935]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67935]	L-xylose ChEBI	-	builds acid from
[Ref.: #67935]	lactose ChEBI	-	builds acid from
[Ref.: #67935]	maltose ChEBI	-	builds acid from
[Ref.: #67935]	melezitose ChEBI	-	builds acid from
[Ref.: #67935]	melibiose ChEBI	-	assimilation
[Ref.: #67935]	melibiose ChEBI	-	builds acid from
[Ref.: #67935]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #67935]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67935]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67935]	myo-inositol ChEBI	-	assimilation
[Ref.: #67935]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67935]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #67935]	nitrate ChEBI	-	reduction
[Ref.: #67935]	nitrite ChEBI	-	reduction
[Ref.: #67935]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67935]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #67935]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #67935]	raffinose ChEBI	-	builds acid from
[Ref.: #67935]	ribitol ChEBI	-	builds acid from
[Ref.: #67935]	salicin ChEBI	-	builds acid from
[Ref.: #67935]	starch ChEBI	-	hydrolysis
[Ref.: #67935]	starch ChEBI	-	builds acid from
[Ref.: #67935]	sucrose ChEBI	-	assimilation
[Ref.: #67935]	sucrose ChEBI	-	builds acid from
[Ref.: #67935]	trehalose ChEBI	-	builds acid from
[Ref.: #67935]	turanose ChEBI	-	builds acid from
[Ref.: #67935]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67935]	urea ChEBI	-	hydrolysis
[Ref.: #67935]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67935]	acetoin ChEBI	no
[Ref.: #67935]	hydrogen sulfide ChEBI	yes
[Ref.: #67935]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #67935]		acetoin ChEBI	-
[Ref.: #67935]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #67935]	acid phosphatase	+	3.1.3.2
[Ref.: #67935]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67935]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67935]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67935]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67935]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #67935]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67935]	arginine dihydrolase	-	3.5.3.6
[Ref.: #67935]	beta-galactosidase	-	3.2.1.23
[Ref.: #67935]	beta-glucosidase	-	3.2.1.21
[Ref.: #67935]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67935]	catalase	+	1.11.1.6
[Ref.: #67935]	cystine arylamidase	-	3.4.11.3
[Ref.: #67935]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67935]	esterase (C 4)	+
[Ref.: #67935]	esterase Lipase (C 8)	+
[Ref.: #67935]	leucine arylamidase	+	3.4.11.1
[Ref.: #67935]	lipase (C 14)	-
[Ref.: #67935]	lysine decarboxylase	-	4.1.1.18
[Ref.: #67935]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67935]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67935]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #67935]	trypsin	+/-	3.4.21.4
[Ref.: #67935]	tryptophan deaminase	-	4.1.99.1
[Ref.: #67935]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65182]	Sample type/isolated from	biofilm sample of thermal spring
[Ref.: #65182]	Geographic location (country and/or sea, region)	Diana-Hygieia Thermal Spring (47.489056 N, 19.047713 E)
[Ref.: #65182]	Country	Hungary
[Ref.: #65182]	Country ISO 3 Code	HUN
[Ref.: #65182]	Continent	Europe
[Ref.: #65182]	Geographic location	47.4891°/19.0477°

[Ref.: #67935]	Sample type/isolated from	gamma-irradiated biofilm sample of a radioactive hydrothermal spring cave
[Ref.: #67935]	Sampling date	2015-10
[Ref.: #67935]	Geographic location (country and/or sea, region)	Gellért Hill, Budapest
[Ref.: #67935]	Country	Hungary
[Ref.: #67935]	Country ISO 3 Code	HUN
[Ref.: #67935]	Continent	Europe
[Ref.: #67935]	Geographic location	47.4891°/19.0477°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT853728 (>99% sequence identity) for Deinococcus fonticola subclade from Microbeatlas

Aquatic Samples	942
Soil Samples	326
Animal Samples	2667
Plant Samples	113
Total Samples	4048

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65182]	Deinococcus sp. partial 16S rRNA gene, strain FeSDHB5-19	LT853728	1405	ENA	47478 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67935]	Deinococcus fonticola FeSDHB5-19	GCA_004634215	contig	GenBank	2528713 tax ID
[Ref.: #66792]	Deinococcus sp. FeSDHB5-19	2528713.3	wgs	PATRIC	2528713 tax ID	*

[Ref.: #67935]	GC-content	63.5 mol%	genome sequence analysis
[Ref.: #67935]	GC-content	60.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus sp. FeSDHB5-19 PATRIC: 2528713.3
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus sp. FeSDHB5-19 PATRIC: 2528713.3
[Ref.: #69480]	motile	no	86.748	yes
[Ref.: #69480]	gram-positive	yes	67.083	yes
[Ref.: #69480]	anaerobic	no	97.438	yes
[Ref.: #69480]	aerobic	yes	88.752	yes
[Ref.: #69480]	halophile	no	94.003	yes
[Ref.: #69480]	spore-forming	no	91.945	yes
[Ref.: #69480]	glucose-util	yes	86.457	no
[Ref.: #69480]	flagellated	no	93.549	yes
[Ref.: #69480]	thermophile	no	88.864	yes
[Ref.: #69480]	glucose-ferment	no	88.934	yes

Availability in culture collections External links

[Ref.: #65182]

Culture collection no.

DSM 106917, NCAIM B.02639

[Ref.: #111301]

SI-ID 405447

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary.	Makk J, Enyedi NT, Toth E, Anda D, Szabo A, Felfoldi T, Schumann P, Madl-Szonyi J, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003383	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65182

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106917

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67935

Judit Makk, Nóra Tünde Enyedi, Erika Tóth, Dóra Anda, Attila Szabó, Tamás Felföldi, Peter Schumann, Judit Mádl-Szonyi, Andrea K. Borsodi: Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary. IJSEM 69: 1724 - 1730 2019 ( DOI 10.1099/ijsem.0.003383 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111301

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405447.1 )

* These data were automatically processed and therefore are not curated

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Deinococcus sp. FeSDHB5-19

Deinococcus sp. FeSDHB5-19

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