Halalkalibacter urbisdiaboli (DSM 104651, CCTCC AB 2016263, FJAT-45385)

Name: Halalkalibacter urbisdiaboli (DSM 104651, CCTCC AB 2016263, FJAT-45385)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158505

Type strain

Strain Designation FJAT-45385

Culture col. no. DSM 104651 CCTCC AB 2016263 FJAT-45385

NCBI tax ID(s) 1960589

Special Collections DSMZ Literature strains

History <- X. Wang; Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-45385<-X. Wang;

Links

Halalkalibacter urbisdiaboli FJAT-45385 is a facultative anaerobe, spore-forming, mesophilic prokaryote that forms circular colonies and was isolated from soil.

spore-forming Gram-negative motile rod-shaped colony-forming facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402680

DSM 104651

@ref 20215

Last LPSN update 2026-02-09 11:38:20

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halalkalibacter

Species Halalkalibacter urbisdiaboli

Full scientific name Halalkalibacter urbisdiaboli (Liu et al. 2019) Joshi et al. 2022

Synonyms (2)

Alkalihalobacillus urbisdiaboli
Bacillus urbisdiaboli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
67919	negative	2.7-3.8 µm	0.7-0.9 µm	rod-shaped		polar

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
67919	1.6 mm	yellow	circular	2 days	Horikoshi I

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65181	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65181	positive	growth	30	mesophilic
67919	positive	growth	20-40
67919	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
67919	positive	optimum	9
67919	positive	growth	7.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

67919

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore description	Type of spore	Confidence
67919	ellipsoidal	endospore
67919	terminal	endospore
125438			95.171

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67919	NaCl	positive	growth	0.0-10.0 %(w/v)
67919	NaCl	positive	optimum	4 %(w/v)

Observation

@ref	Observation
67919	The cell-wall pepti-doglycan containsmeso-diaminopimelic acid
67919	the main isoprenoid quinone is MK-7
67919	The main polar lipids are diphosphatidylglycerol, phosphatidylglycerol and phospha-tidylethanolamine

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67919	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+	hydrolysis
67919	16947 ChEBI	citrate	+	assimilation
67919		esculin ferric citrate	+	builds acid from
67919	5291 ChEBI	gelatin	+	hydrolysis
67919	28066 ChEBI	gentiobiose	+	builds acid from
67919	17234 ChEBI	glucose	+	builds acid from
67919	28087 ChEBI	glycogen	+	builds acid from
67919	30849 ChEBI	L-arabinose	+	builds acid from
67919	29864 ChEBI	mannitol	+	builds acid from
67919	37684 ChEBI	mannose	+	builds acid from
67919	17632 ChEBI	nitrate	+	reduction
67919	17814 ChEBI	salicin	+	builds acid from
67919	28017 ChEBI	starch	+	hydrolysis
67919	28017 ChEBI	starch	+	builds acid from
67919	53424 ChEBI	tween 20	+	hydrolysis
67919	53423 ChEBI	tween 40	+	hydrolysis
67919	53425 ChEBI	tween 60	+	hydrolysis
67919	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
67919	2637	amikacin	30 µg
67919	28971	ampicillin	10 µg
67919	2955	azithromycin	15 µg
67919	474053	cefazolin	30 µg
67919	17698	chloramphenicol	30 µg
67919	3745	clindamycin	2 µg
67919	50845	doxycycline	30 µg
67919	48923	erythromycin	15 µg
67919	17833	gentamicin	120 µg
67919	17833	gentamicin	10 µg
67919	6104	kanamycin	30 µg
67919	7507	neomycin	30 µg
67919	7809	oxacillin	1 µg
67919	18208	penicillin g	10 µg
67919	8309	polymyxin b	300 µg
67919	28077	rifampicin	5 µg
67919	17076	streptomycin	300 µg
67919	27902	tetracycline	30 µg
67919	28001	vancomycin	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67919	16136 ChEBI	hydrogen sulfide
67919	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
67919	acid phosphatase	-	3.1.3.2
67919	alkaline phosphatase	-	3.1.3.1
67919	alpha-chymotrypsin	-	3.4.21.1
67919	alpha-fucosidase	-	3.2.1.51
67919	alpha-galactosidase	-	3.2.1.22
67919	alpha-glucosidase	+	3.2.1.20
67919	alpha-glucosidase	-	3.2.1.20
67919	alpha-mannosidase	-	3.2.1.24
67919	arginine dihydrolase	-	3.5.3.6
67919	beta-galactosidase	+	3.2.1.23
67919	beta-glucuronidase	+	3.2.1.31
67919	catalase	+	1.11.1.6
67919	cystine arylamidase	-	3.4.11.3
67919	cytochrome oxidase	+	1.9.3.1
67919	esterase (C 4)	+
67919	esterase Lipase (C 8)	+
67919	leucine arylamidase	-	3.4.11.1
67919	lipase (C 14)	-
67919	lysine decarboxylase	-	4.1.1.18
67919	N-acetyl-beta-glucosaminidase	-	3.2.1.52
67919	naphthol-AS-BI-phosphohydrolase	+
67919	ornithine decarboxylase	-	4.1.1.17
67919	trypsin	-	3.4.21.4
67919	urease	-	3.5.1.5
67919	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65181	soil	Xinjiang Province	China	CHN	Asia
67919	soil samples collected from an area comprising wind-eroded landforms	Xinjiang, Devil City	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67919	ASM215638v1 assembly for Halalkalibacter urbisdiaboli FJAT-45385	scaffold	GCA_002156385	1960589.3	2885772184	1960589	67.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67919	Halalkalibacter urbisdiaboli strain FJAT-45385 16S ribosomal RNA gene, partial sequence	KY612314	1455		1960589

GC content

@ref	GC-content (mol%)	Method
67919	38.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alkalihalobacillus urbisdiaboli FJAT-45385
NCBI: GCA_002156385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.55	yes
125438	anaerobic	anaerobicⓘ	no	95.38	yes
125438	aerobic	aerobicⓘ	yes	60.00	yes
125438	spore-forming	spore-formingⓘ	yes	95.17	no
125438	thermophilic	thermophileⓘ	no	86.88	no
125438	flagellated	motile2+ⓘ	yes	86.09	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera.	Joshi A, Thite S, Karodi P, Joseph N, Lodha T.	Front Microbiol	10.3389/fmicb.2021.722369	2021
Phylogeny	Bacillus urbisdiaboli sp. nov., isolated from soil sampled in Xinjiang.	Liu B, Liu GH, Wang XY, Wang JP, Chen Z, Chen MC, Zhang HF, Singonca C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003363	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65181	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104651
#67919	Bo Liu, Guo-Hong Liu, Xiao-Ying Wang, Jie-Ping Wang, Zheng Chen, Mei-Chun Chen, Hai-Feng Zhang, Cetin Singonca: Bacillus urbisdiaboli sp. nov., isolated from soil sampled in Xinjiang. IJSEM 69: 1591 - 1596 2019 ( DOI 10.1099/ijsem.0.003363 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halalkalibacter urbisdiaboli (DSM 104651, CCTCC AB 2016263, FJAT-45385)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002156385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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