Mycobacterium syngnathidarum (DSM 105112, ATCC TSD-89, 27335)

Name: Mycobacterium syngnathidarum (DSM 105112, ATCC TSD-89, 27335)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158439

Type strain

Strain Designation 27335

Culture col. no. DSM 105112 ATCC TSD-89 27335

NCBI tax ID(s) 1908205

Special Collections DSMZ Literature strains

Links

Mycobacterium syngnathidarum 27335 is a mesophilic prokaryote that was isolated from Ovary of a pipefish .

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404094

DSM 105112

@ref 20215

Last LPSN update 2025-12-16 10:08:01

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium syngnathidarum

Full scientific name Mycobacterium syngnathidarum Fogelson et al. 2018

Morphology

Multimedia

@ref:	65115
multimedia content:	DSM_105112.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105112.jpg
caption:	Medium 645 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65115	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
66700	5 % sheep's blood agar
66700	7H11 solid agar media
66700	Lowenstein-Jensen agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65115	positive	growth	28	mesophilic
66700	positive	growth	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66700	62345 ChEBI	L-rhamnose	-	growth
66700	29864 ChEBI	mannitol	-	growth
66700	17268 ChEBI	myo-inositol	-	growth
66700	30911 ChEBI	sorbitol	-	growth
66700	27082 ChEBI	trehalose	-	growth
66700	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
66700	2637	Amikacin	1 µg/mL
66700	2637	Amikacin	16 µg/mL
66700	2676	amoxicillin	>64 µg/mL
66700	478164	cefepime	>32 µg/mL
66700	209807	cefoxitin
66700	29007	ceftriaxone	>64 µg/mL
66700	100241	ciprofloxacin	0.25 µg/mL
66700	3732	clarithromycin	0.5 µg/mL
66700	3732	clarithromycin	0.25 µg/mL
66700	48947	clavulanic acid	>32 µg/mL
66700	50845	doxycycline	0.12 µg/mL
66700	50845	doxycycline
66700	471744	imipenem
66700	63607	linezolid	1 µg/mL
66700	50694	minocycline	>8 µg/mL
66700	63611	moxifloxacin	0.25 µg/mL
66700	63611	moxifloxacin
66700	9332	sulfamethoxazole	19 µg/mL
66700	9332	sulfamethoxazole
66700	149836	tigecycline	0.25 µg/mL
66700	28864	tobramycin
66700	45924	trimethoprim	1 µg/mL
66700	45924	trimethoprim

Enzymes

@ref	Value	Activity	Ec
66700	arylsulfatase	+	3.1.6.1
66700	catalase	+	1.11.1.6
66700	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Urogenital tract	#Ovary
#Host	#Fishes	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65115	Ovary of a pipefish (Syngnathoides baculeatus)	South Carolina	USA	USA	North America	33.8361	-81.1636 33.8361/-81.1636
66700	ovarian tissue from a clinically ill lined alligator pipefish (Syngnathoides biaculeatus) with gross and histologic lesions consistent with mycobacteriosis.	Athens, Georgia	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence MG015886 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	50
Plant Samples	337
Total Samples	496

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM194262v1 assembly for Mycobacterium syngnathidarum 27335	contig	GCA_001942625	2862860994	1908205	60.52

Genome browser: GCA_001942625

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
65115	Mycobacterium syngnathidarum strain 27335 16S ribosomal RNA gene, partial sequence	MG015886	1524	1908205
66700	Mycobacterium syngnathidarum strain 27335 16S ribosomal RNA gene, partial sequence	MG015886.1	1524	1908205
124043	Mycobacterium sp. 27335 16S ribosomal RNA gene, complete sequence.	MF975700	1524	1908205
65115	Mycobacterium syngnathidarum strain 27335 NODE_66_length_1543_cov_54.1773, whole genome shotgun sequence	MLCL01000005	1543	1908205

GC content

@ref	GC-content (mol%)	Method
66700	66.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium syngnathidarum 27335
NCBI: GCA_001942625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	75.50	no
125439	motility	BacteriaNetⓘ	no	61.10	no
125439	gram_stain	BacteriaNetⓘ	positive	89.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish.	Fogelson SB, Camus AC, Lorenz W, Phillips A, Bartlett P, Sanchez S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002978	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65115	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105112
#66700	Susan B. Fogelson, Alvin C. Camus, Walt Lorenz, Ashley Phillips, Paula Bartlett, Susan Sanchez: Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish. IJSEM 68: 3696 - 3700 2018 ( DOI 10.1099/ijsem.0.002978 , PubMed 30272539 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium syngnathidarum (DSM 105112, ATCC TSD-89, 27335)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001942625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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