Name: Mycobacterium syngnathidarum 27335
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158439

Type strain:

Species: Mycobacterium syngnathidarum

Strain Designation: 27335

Culture col. no.: DSM 105112, ATCC TSD-89

Strain history: <- S. Sanchez, Univ. of Georgia, Athens, USA; 27335 <- A. Phillips, S. Sanchez, Univ. of Georgia, Athens, USA

NCBI tax ID(s): 1908205 (species)

SI-ID 404094

DSM 105112

Section

Mycobacterium syngnathidarum 27335 is a mesophilic bacterium that was isolated from Ovary of a pipefish .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium syngnathidarum**
	Full Scientific Name (LPSN)	Mycobacterium syngnathidarum Fogelson et al. 2018

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #65115]

Caption:

Medium 645 28°C

[Ref.: #65115]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65115]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #65115]

Culture medium growth

[Ref.: #65115]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65115]

Culture medium composition

expand / minimize

[Ref.: #66700]

Culture medium

5 % sheep's blood agar

[Ref.: #66700]

Culture medium growth

[Ref.: #66700]

Culture medium

7H11 solid agar media

[Ref.: #66700]

Culture medium growth

[Ref.: #66700]

Culture medium

Lowenstein-Jensen agar

[Ref.: #66700]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65115]			growth	28 °C
[Ref.: #66700]			growth	30-37 °C

[Ref.: #65115]	Temperature range	mesophilic
[Ref.: #66700]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66700]	L-rhamnose ChEBI	-	growth
[Ref.: #66700]	mannitol ChEBI	-	growth
[Ref.: #66700]	myo-inositol ChEBI	-	growth
[Ref.: #66700]	sorbitol ChEBI	-	growth
[Ref.: #66700]	trehalose ChEBI	-	growth
[Ref.: #66700]	tween 80 ChEBI	-	hydrolysis

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66700]	Amikacin ChEBI	yes	1	µg/mL
[Ref.: #66700]	Amikacin ChEBI	yes	16	µg/mL
[Ref.: #66700]	cefepime ChEBI	yes	>32	µg/mL
[Ref.: #66700]	cefoxitin ChEBI				yes	>128	µg/mL
[Ref.: #66700]	ceftriaxone ChEBI	yes	>64	µg/mL
[Ref.: #66700]	ciprofloxacin ChEBI	yes	0.25	µg/mL
[Ref.: #66700]	clarithromycin ChEBI	yes	0.5	µg/mL
[Ref.: #66700]	clarithromycin ChEBI	yes	0.25	µg/mL
[Ref.: #66700]	doxycycline ChEBI	yes	0.12	µg/mL
[Ref.: #66700]	doxycycline ChEBI				yes	>16	µg/mL
[Ref.: #66700]	imipenem ChEBI				yes	32	µg/mL
[Ref.: #66700]	linezolid ChEBI	yes	1	µg/mL
[Ref.: #66700]	minocycline ChEBI	yes	>8	µg/mL
[Ref.: #66700]	moxifloxacin ChEBI	yes	0.25	µg/mL
[Ref.: #66700]	moxifloxacin ChEBI				yes	4	µg/mL
[Ref.: #66700]	tigecycline ChEBI	yes	0.25	µg/mL
[Ref.: #66700]	tobramycin ChEBI				yes	8	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66700]	12	amoxicillin ChEBI	yes	>64	µg/mL
[Ref.: #66700]	12	clavulanic acid ChEBI	yes	>32	µg/mL
[Ref.: #66700]	26	sulfamethoxazole ChEBI	yes	19	µg/mL
[Ref.: #66700]	26	sulfamethoxazole ChEBI				yes	76	µg/mL
[Ref.: #66700]	26	trimethoprim ChEBI	yes	1	µg/mL
[Ref.: #66700]	26	trimethoprim ChEBI				yes	4	µg/mL

	Enzyme	Enzyme activity	EC number
[Ref.: #66700]	arylsulfatase	+	3.1.6.1
[Ref.: #66700]	catalase	+	1.11.1.6
[Ref.: #66700]	cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65115]	Sample type/isolated from	Ovary of a pipefish (Syngnathoides baculeatus)
[Ref.: #65115]	Geographic location (country and/or sea, region)	South Carolina
[Ref.: #65115]	Country	USA
[Ref.: #65115]	Country ISO 3 Code	USA
[Ref.: #65115]	Continent	North America
[Ref.: #65115]	Geographic location	33.8361°/-81.1636°

[Ref.: #66700]	Sample type/isolated from	ovarian tissue from a clinically ill lined alligator pipefish (Syngnathoides biaculeatus) with gross and histologic lesions consistent with mycobacteriosis.
[Ref.: #66700]	Geographic location (country and/or sea, region)	Athens, Georgia
[Ref.: #66700]	Country	USA
[Ref.: #66700]	Country ISO 3 Code	USA
[Ref.: #66700]	Continent	North America
[Ref.: #66700]	Enrichment culture	Middlebrook 7H11 media
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Urogenital tract	#Ovary
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG015886 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	50
Plant Samples	337
Total Samples	496

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66700]	Mycobacterium sp. 27335 16S ribosomal RNA gene, partial sequence	MG015886.1	1524	ENA	1908205 tax ID
[Ref.: #65115]	Mycobacterium sp. 27335 16S ribosomal RNA gene, partial sequence	MG015886	1524	ENA	1908205 tax ID
[Ref.: #65115]	Mycobacterium syngnathidarum strain 27335 NODE_66_length_1543_cov_54.1773, whole genome shotgun sequence	MLCL01000005	1543	ENA	1908205 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium syngnathidarum 27335	GCA_001942625	contig	GenBank	1908205 tax ID	*
[Ref.: #66792]	Mycobacterium syngnathidarum 27335	2862860994	draft	JGI IMG/M	1908205 tax ID	*

[Ref.: #66700]

GC-content

66.2 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65115]

Culture collection no.

DSM 105112, ATCC TSD-89

[Ref.: #111240]

SI-ID 404094

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish.	Fogelson SB, Camus AC, Lorenz W, Phillips A, Bartlett P, Sanchez S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002978	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65115

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105112

#66700

Susan B. Fogelson, Alvin C. Camus, Walt Lorenz, Ashley Phillips, Paula Bartlett, Susan Sanchez: Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish. IJSEM 68: 3696 - 3700 2018 ( DOI 10.1099/ijsem.0.002978 , PubMed 30272539 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111240

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404094.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium syngnathidarum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF