Name: Peribacillus acanthi L28
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158416

Type strain:

Species: Peribacillus acanthi

Strain Designation: L28

Culture col. no.: DSM 104296, MCCC 1K03287

Strain history: <- Q. Yin; Shenzhen University, Shenzhen, P.R. CHINA; L28

NCBI tax ID(s): 2171554 (species)

SI-ID 400102

DSM 104296

Special Collections

Section

Peribacillus acanthi L28 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Mai Po Inner Deep Bay rhizospere of Acanthus ilicifolius.

colony-forming
Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Peribacillus*
	Species	**Peribacillus acanthi**
	Full Scientific Name (LPSN)	Peribacillus acanthi (Ma et al. 2018) Patel and Gupta 2020

Synonym

Bacillus acanthi

Information on morphological and physiological properties Morphology

[Ref.: #66677]	Gram stain	positive

[Ref.: #66677]	Cell length	1.5-5.0 µm

[Ref.: #66677]	Cell width	0.5-1.0 µm

[Ref.: #66677]	Cell shape	rod-shaped

[Ref.: #66677]	Motility	no

[Ref.: #66677]	Colony size	0.5-5 mm
[Ref.: #66677]	Colony color	white pigmented
[Ref.: #66677]	Colony shape	circular
[Ref.: #66677]	Incubation period	3 days
[Ref.: #66677]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65092]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #65092]

Culture medium growth

[Ref.: #65092]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65092]

Culture medium composition

expand / minimize

[Ref.: #66677]

Culture medium

Marine agar (MA)

[Ref.: #66677]

Culture medium growth

		Temperature
[Ref.: #65092]	growth	30 °C
[Ref.: #66677]	optimum	37 °C
[Ref.: #66677]	growth	20-45 °C

	pH	Kind of pH		pH
[Ref.: #66677]			optimum	7.5
[Ref.: #66677]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66677]

Oxygen tolerance

aerobe

[Ref.: #66677]	Type of spore	endospore
[Ref.: #66677]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.932
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66677]		NaCl		growth	0-5	%(w/v)
[Ref.: #66677]		NaCl		optimum	0.5	%(w/v)

[Ref.: #66677]

Observation

colonies are circular, smooth, convex and regular withentire margin.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66677]	amygdalin ChEBI	-	fermentation
[Ref.: #66677]	arabinose ChEBI	-	fermentation
[Ref.: #66677]	casein	-	hydrolysis
[Ref.: #66677]	citric acid ChEBI	+	assimilation
[Ref.: #66677]	gelatin ChEBI	-	hydrolysis
[Ref.: #66677]	glucose ChEBI	-	fermentation
[Ref.: #66677]	mannose ChEBI	-	fermentation
[Ref.: #66677]	melibiose ChEBI	-	fermentation
[Ref.: #66677]	myo-inositol ChEBI	-	fermentation
[Ref.: #66677]	nitrate ChEBI	-	reduction
[Ref.: #66677]	rhamnose ChEBI	-	fermentation
[Ref.: #66677]	sorbitol ChEBI	-	fermentation
[Ref.: #66677]	starch ChEBI	+	hydrolysis
[Ref.: #66677]	sucrose ChEBI	-	fermentation
[Ref.: #66677]	tryptophan ChEBI	+	energy source
[Ref.: #66677]	tween 20 ChEBI	-	hydrolysis
[Ref.: #66677]	tween 40 ChEBI	-	hydrolysis
[Ref.: #66677]	tween 60 ChEBI	-	hydrolysis
[Ref.: #66677]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66677]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66677]	acetoin ChEBI	no
[Ref.: #66677]	hydrogen sulfide ChEBI	yes
[Ref.: #66677]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66677]	acid phosphatase	+	3.1.3.2
[Ref.: #66677]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66677]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66677]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66677]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66677]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66677]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66677]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66677]	beta-galactosidase	-	3.2.1.23
[Ref.: #66677]	beta-glucosidase	-	3.2.1.21
[Ref.: #66677]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66677]	beta-N-acetylgalactosaminidase	+
[Ref.: #66677]	catalase	+	1.11.1.6
[Ref.: #66677]	cystine arylamidase	-	3.4.11.3
[Ref.: #66677]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66677]	esterase	-
[Ref.: #66677]	esterase (C 4)	-
[Ref.: #66677]	esterase Lipase (C 8)	+
[Ref.: #66677]	gelatinase	-
[Ref.: #66677]	leucine arylamidase	-	3.4.11.1
[Ref.: #66677]	lipase (C 14)	-
[Ref.: #66677]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66677]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66677]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66677]	trypsin	-	3.4.21.4
[Ref.: #66677]	tryptophan deaminase	-	4.1.99.1
[Ref.: #66677]	tryptophan deaminase	+	4.1.99.1
[Ref.: #66677]	urease	-	3.5.1.5
[Ref.: #66677]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65092]	Sample type/isolated from	Mai Po Inner Deep Bay rhizospere of Acanthus ilicifolius
[Ref.: #65092]	Country	China
[Ref.: #65092]	Country ISO 3 Code	CHN
[Ref.: #65092]	Continent	Asia

[Ref.: #66677]	Sample type/isolated from	the rhizosphere soil of a mangrove plant, Acanthus ilicifolius
[Ref.: #66677]	Geographic location (country and/or sea, region)	Mai Po Inner Deep Bay Ramsar Site
[Ref.: #66677]	Geographic location	22.4900°/114.0500°
[Ref.: #66677]	Enrichment culture	sterile marine agar 2216
[Ref.: #66677]	Isolation/enrichment procedure	the conventional dilution-plating technique
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65092]	Peribacillus acanthi strain L28 16S ribosomal RNA gene, partial sequence	KY038378	1521	GenBank ENA	2171554 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peribacillus acanthi L28	GCA_003073175	scaffold	GenBank ENA	2171554 tax ID	*
[Ref.: #66792]	Bacillus sp. XY-L28	2171554.3	wgs	PATRIC	2171554 tax ID	*

[Ref.: #65092]	GC-content	36.9 mol%
[Ref.: #66677]	GC-content	36.93 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Peribacillus acanthi L28 NCBI: GCA_003073175.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Peribacillus acanthi L28 NCBI: GCA_003073175.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	73.298	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.708	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.274	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.932	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.733	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.692	no

Availability in culture collections External links

[Ref.: #65092]

Culture collection no.

DSM 104296, MCCC 1K03287

[Ref.: #111219]

SI-ID 400102

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus acanthi sp. nov., isolated from the rhizosphere soil of a mangrove plant Acanthus ilicifolius.	Ma K, Yin Q, Chen L, Lai Q, Xu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002950	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65092

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104296

#66677

Ke Ma, Qi Yin, Liying Chen, Qiliang Lai, Ying Xu: Bacillus acanthi sp. nov., isolated from the rhizosphere soil of a mangrove plant Acanthus ilicifolius. IJSEM 68: 3047 - 3051 2018 ( DOI 10.1099/ijsem.0.002950 , PubMed 30063204 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111219

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400102.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Peribacillus acanthi in external resources:
SILVA
BRENDA
PANGAEA
GBIF