Name: Glycomyces dulcitolivorans SJ-25
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158370

Type strain:

Species: Glycomyces dulcitolivorans

Strain Designation: SJ-25

Culture col. no.: DSM 105121, CGMCC 4.7414

Strain history: <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; SJ-25<-J. Song; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing

NCBI tax ID(s): 2200759 (species)

SI-ID 406549

DSM 105121

Special Collections

Section

Glycomyces dulcitolivorans SJ-25 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from rhizosphere soil of Triticum aestivum L..

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces dulcitolivorans**
	Full Scientific Name (LPSN)	Glycomyces dulcitolivorans Mu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66675]	Gram stain	positive

[Ref.: #69480]	Motility	no Confidence in %93.6

[Ref.: #66675]	Colony color	white
[Ref.: #66675]	Incubation period	28 days
[Ref.: #66675]	Cultivation medium used	ISP 3 agar

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Medium recipe at MediaDive

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

Bennett's agar media

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Culture medium

Czapek's agar

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Culture medium

ISP 1

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Culture medium

ISP 2

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Culture medium

ISP 3

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Culture medium

ISP 3 agar

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Culture medium

ISP 4

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Culture medium

ISP 6

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Culture medium

Nutrient agar (NA)

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Culture medium growth

		Temperature
[Ref.: #65046]	growth	28 °C
[Ref.: #66675]	optimum	28 °C
[Ref.: #66675]	growth	20-40 °C

	pH	Kind of pH		pH
[Ref.: #66675]			optimum	7
[Ref.: #66675]			growth	4.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #66675]	Spore description	straight or flexuous spores chains consisting of cylindrical spores
[Ref.: #66675]	Type of spore	spore
[Ref.: #66675]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66675]		NaCl		growth	0-3.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66675]	cellulose ChEBI	+	degradation
[Ref.: #66675]	creatine ChEBI	+	nitrogen source
[Ref.: #66675]	D-fructose ChEBI	-	carbon source
[Ref.: #66675]	D-galactose ChEBI	+	carbon source
[Ref.: #66675]	D-glucose ChEBI	+	carbon source
[Ref.: #66675]	D-mannitol ChEBI	+	carbon source
[Ref.: #66675]	D-mannose ChEBI	+	carbon source
[Ref.: #66675]	D-ribose ChEBI	-	carbon source
[Ref.: #66675]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66675]	D-xylose ChEBI	-	carbon source
[Ref.: #66675]	esculin ChEBI	+	hydrolysis
[Ref.: #66675]	galactitol ChEBI	+	carbon source
[Ref.: #66675]	gelatin ChEBI	+	degradation
[Ref.: #66675]	glycine ChEBI	-	nitrogen source
[Ref.: #66675]	L-alanine ChEBI	+	nitrogen source
[Ref.: #66675]	L-arabinose ChEBI	-	carbon source
[Ref.: #66675]	L-arginine ChEBI	+	nitrogen source
[Ref.: #66675]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #66675]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #66675]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #66675]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #66675]	L-proline ChEBI	+	nitrogen source
[Ref.: #66675]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66675]	L-serine ChEBI	+	nitrogen source
[Ref.: #66675]	L-threonine ChEBI	+	nitrogen source
[Ref.: #66675]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #66675]	lactose ChEBI	-	carbon source
[Ref.: #66675]	maltose ChEBI	+	carbon source
[Ref.: #66675]	myo-inositol ChEBI	+	carbon source
[Ref.: #66675]	nitrate ChEBI	-	reduction
[Ref.: #66675]	raffinose ChEBI	+	carbon source
[Ref.: #66675]	starch ChEBI	+	hydrolysis
[Ref.: #66675]	sucrose ChEBI	+	carbon source
[Ref.: #66675]	tween 20 ChEBI	+	degradation
[Ref.: #66675]	tween 40 ChEBI	+	degradation
[Ref.: #66675]	tween 80 ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66675]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66675]		catalase	+	1.11.1.6
[Ref.: #66675]		urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0 iso	28.2
C15:0 anteiso	25.2
C15:0 iso	11.7
C17:0 anteiso	10.5
C14:0 iso	10.1
C16:0	4.7
C16:1 w7c	4.3
C18:0	2.5
C17:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65046]	Sample type/isolated from	rhizosphere soil of Triticum aestivum L.
[Ref.: #65046]	Geographic location (country and/or sea, region)	Langfang, Hebei province (39° 32' N, 116° 40' E)
[Ref.: #65046]	Country	China
[Ref.: #65046]	Country ISO 3 Code	CHN
[Ref.: #65046]	Continent	Asia
[Ref.: #65046]	Geographic location	39.5333°/116.6670°

[Ref.: #66675]	Sample type/isolated from	rhizosphere soil of wheat (Triticum aestivum L.)
[Ref.: #66675]	Geographic location (country and/or sea, region)	Langfang, Hebei Province
[Ref.: #66675]	Country	China
[Ref.: #66675]	Country ISO 3 Code	CHN
[Ref.: #66675]	Continent	Asia
[Ref.: #66675]	Geographic location	39.5333°/116.6670°
[Ref.: #66675]	Enrichment culture	humic acid-vitamin agar
[Ref.: #66675]	Enrichment culture composition	supplemented with cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1)
[Ref.: #66675]	Enrichment culture duration	28 days
[Ref.: #66675]	Enrichment culture temperature	28 ̊C
[Ref.: #66675]	Isolation/enrichment procedure	The rhizosphere soil sample was ground into powder and then suspended in sterile distilled water followed by a standard serial dilution technique. The diluted soil suspension was spread on humic acid-vitamin agar and incubated at 28°C for 28 days.
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65046]	Glycomyces dulcitolivorans strain SJ-25 16S ribosomal RNA gene, partial sequence	MH342642	1524	GenBank ENA	2200759 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glycomyces dulcitolivorans SJ-25	GCA_003265355	scaffold	GenBank ENA	2200759 tax ID	*
[Ref.: #66792]	Glycomyces dulcitolivorans SJ-25	2835077007	draft	JGI IMG/M	2200759 tax ID	*

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GC-content

72.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glycomyces dulcitolivorans SJ-25 NCBI: GCA_003265355.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glycomyces dulcitolivorans SJ-25 NCBI: GCA_003265355.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.895	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.669	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.082	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.361	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.909	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.6	no

Availability in culture collections External links

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Culture collection no.

DSM 105121, CGMCC 4.7414

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SI-ID 406549

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces terrestris sp. nov., isolated from extremely arid soil from Yuanmou Earth Forest.	Li Q, Li G, Lang L, An D, Jiang C, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004580	2020	*
Phylogeny	Glycomyces albidus sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Qian L, Duan L, Lin J, Yang Y, Song J, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004131	2020	*
Phylogeny	Glycomyces dulcitolivorans sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Mu S, Sun T, Li Y, Jiang S, Guo X, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002948	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65046

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105121

#66675

Shan Mu, Tianyu Sun, Yuanyuan Li, Shanwen Jiang, Xiaowei Guo, Xiangjing Wang, Junwei Zhao, Wensheng Xiang: Glycomyces dulcitolivorans sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.). IJSEM 68: 3034 - 3039 2018 ( DOI 10.1099/ijsem.0.002948 , PubMed 30063203 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111175

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406549.1 )

* These data were automatically processed and therefore are not curated

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