Frankia canadensis (DSM 45898, ARgP5AG, CECT 9033)

Multimedia

• @ref:	66793
  multimedia content:	EM_DSM_45898_1.jpg
  multimedia.multimedia content:	EM_DSM_45898_1.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

• @ref:	66793
  multimedia content:	EM_DSM_45898_2.jpg
  multimedia.multimedia content:	EM_DSM_45898_2.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

• @ref:	66793
  multimedia content:	EM_DSM_45898_3.jpg
  multimedia.multimedia content:	EM_DSM_45898_3.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
65047	DPM MEDIUM (DSMZ Medium 737)		Medium recipe at MediaDive	Name: DPM MEDIUM (DSMZ Medium 737) Composition: Na-propionate 1.2 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.1 g/l Na2-EDTA 0.013608 g/l CaCl2 x 2 H2O 0.01 g/l FeSO4 x 7 H2O 0.009972 g/l H3BO3 0.00286 g/l MnCl2 x 4 H2O 0.00181 g/l ZnSO4 x 7 H2O 0.00022 g/l CuSO4 x 5 H2O 8e-05 g/l CoCl2 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l Distilled water
65047	BAP+ MEDIUM FOR FRANKIA (DSMZ Medium 1536)		Medium recipe at MediaDive	Name: BAP+ MEDIUM FOR FRANKIA (DSMZ Medium 1536) Composition: KH2PO4 0.95 g/l K2HPO4 0.6 g/l Na-propionate 0.48 g/l NH4Cl 0.27 g/l MgSO4 x 7 H2O 0.025 g/l Citric acid 0.01 g/l Eisencitrat 0.01 g/l CaCl2 x 2 H2O 0.01 g/l H3BO3 0.00286 g/l MnCl2 x 4 H2O 0.00181 g/l Pyridoxine hydrochloride 0.0005 g/l Nicotinic acid 0.0005 g/l ZnSO4 x 7 H2O 0.00022 g/l Thiamine HCl 0.0001 g/l CuSO4 x 5 H2O 8e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l CoSO4 x 7 H2O 1e-06 g/l Distilled water
66668	basic propionate medium			with ammonium
66668	basic propionate medium			without ammonium

Culture temp

Culture pH

Observation

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66668	30796 ChEBI	(R)-malic acid	-	carbon source
66668	16651 ChEBI	(S)-lactate	+	carbon source
66668	30797 ChEBI	(S)-malic acid	-	carbon source
66668	64552 ChEBI	2-hydroxybutyrate	-	carbon source
66668	16763 ChEBI	2-oxobutanoate	+	carbon source
66668	16810 ChEBI	2-oxoglutarate	-	carbon source
66668	37054 ChEBI	3-hydroxybutyrate	-	carbon source
66668	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
66668	13705 ChEBI	acetoacetate	+	carbon source
66668	71422 ChEBI	beta-gentiobiose	-	carbon source
66668	73706 ChEBI	bromosuccinate	-	carbon source
66668	17057 ChEBI	cellobiose	-	carbon source
66668	53258 ChEBI	citric acid	+	carbon source
66668	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
66668	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
66668	23652 ChEBI	dextrin	+	carbon source
66668	32323 ChEBI	glucuronamide	-	carbon source
66668	51850 ChEBI	methyl pyruvate	-	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	enterobactin biosynthesis	100	3 of 3
66794	starch degradation	100	10 of 10
66794	suberin monomers biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	aspartate and asparagine metabolism	100	9 of 9
66794	octane oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	aerobactin biosynthesis	100	1 of 1
66794	phenylalanine metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	aclacinomycin biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolysis	82.35	14 of 17
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	histidine metabolism	79.31	23 of 29
66794	purine metabolism	78.72	74 of 94
66794	citric acid cycle	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	vitamin B12 metabolism	76.47	26 of 34
66794	alanine metabolism	75.86	22 of 29
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	non-pathway related	73.68	28 of 38
66794	carotenoid biosynthesis	72.73	16 of 22
66794	proline metabolism	72.73	8 of 11
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	methionine metabolism	69.23	18 of 26
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	pyrimidine metabolism	68.89	31 of 45
66794	tryptophan metabolism	68.42	26 of 38
66794	oxidative phosphorylation	68.13	62 of 91
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	lysine metabolism	66.67	28 of 42
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	lipid metabolism	64.52	20 of 31
66794	metabolism of disaccharids	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	sulfate reduction	61.54	8 of 13
66794	myo-inositol biosynthesis	60	6 of 10
66794	arachidonate biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	vitamin K metabolism	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	degradation of sugar alcohols	56.25	9 of 16
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	vitamin B6 metabolism	54.55	6 of 11
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	glycine metabolism	50	5 of 10
66794	carnitine metabolism	50	4 of 8
66794	degradation of hexoses	50	9 of 18
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	catecholamine biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	cholesterol biosynthesis	45.45	5 of 11
66794	phenol degradation	45	9 of 20
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	hydrogen production	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	degradation of pentoses	35.71	10 of 28
66794	sulfoquinovose degradation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	arachidonic acid metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	mevalonate metabolism	28.57	2 of 7
66794	chlorophyll metabolism	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	methanogenesis from CO2	25	3 of 12

Isolation source categories

Isolation

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65047	Frankia sp. (strain argp5) 16S ribosomal RNA (16S rRNA) gene	L40612.1	1448		1855

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.	Normand P, Nouioui I, Pujic P, Fournier P, Dubost A, Schwob G, Klenk HP, Nguyen A, Abrouk D, Herrera-Belaroussi A, Pothier JF, Pfluger V, Fernandez MP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002939	2018