Sphaerisporangium rhizosphaerae (DSM 106198, CGMCC 4.7429, JCM 32389)

Name: Sphaerisporangium rhizosphaerae (DSM 106198, CGMCC 4.7429, JCM 32389)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158369

Type strain

Strain Designation NEAU-mq3

Culture col. no. DSM 106198 CGMCC 4.7429 JCM 32389 NEAU-mq3

NCBI tax ID(s) 2269375

Special Collections DSMZ JCM Literature strains

History DSMZ <- J. Zhao, School of Life Science, Northeast Agricultural Univ., Harbin, P.R. China; NEAU-mq3 <- S. Mu; NEAU-mq3 JCM <-- J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-mq3.

Links

Sphaerisporangium rhizosphaerae NEAU-mq3 is an aerobe, Gram-positive bacterium that was isolated from rhizosphere soil of a rubber tree.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403352

JCM 32389,DSM 106198

@ref 20215

Last LPSN update 2026-05-29 08:43:57

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Sphaerisporangium

Species Sphaerisporangium rhizosphaerae

Full scientific name Sphaerisporangium rhizosphaerae Mu et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Motility	Confidence
66645	positive
125439	positive		97.979

Multicellular morphology

@ref	Forms multicellular complex	Complex color	Medium name	Further description
66645		yellowish pink	ISP3	actinomycete which forms deep yellowish pink substrate mycelium on ISP 3 medium. Spherical sporangia are borne on aerial mycelia.

Multimedia

@ref:	65045
multimedia content:	DSM_106198.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_106198.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65045	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
65045	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65045	positive	growth	28
66645	positive	optimum	28
66645	positive	growth	18-37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
66645	positive	optimum	7
66645	positive	growth	7-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66645	aerobe
125439	obligate aerobe	98.532

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66645	NaCl	positive	growth	0-1 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₂), MK-9(H₄), MK-9(H₀)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66645	62968 ChEBI	cellulose	-	degradation
66645	16919 ChEBI	creatine	+	nitrogen source
66645	15824 ChEBI	D-fructose	-	carbon source
66645	12936 ChEBI	D-galactose	-	carbon source
66645	17634 ChEBI	D-glucose	+	carbon source
66645	16899 ChEBI	D-mannitol	-	carbon source
66645	16024 ChEBI	D-mannose	-	carbon source
66645	16988 ChEBI	D-ribose	-	carbon source
66645	17924 ChEBI	D-sorbitol	-	carbon source
66645	65327 ChEBI	D-xylose	-	carbon source
66645	5291 ChEBI	gelatin	-	hydrolysis
66645	15428 ChEBI	glycine	-	nitrogen source
66645	16977 ChEBI	L-alanine	+	nitrogen source
66645	30849 ChEBI	L-arabinose	-	carbon source
66645	16467 ChEBI	L-arginine	+	nitrogen source
66645	17196 ChEBI	L-asparagine	+	nitrogen source
66645	29991 ChEBI	L-aspartate	-	nitrogen source
66645	29985 ChEBI	L-glutamate	+	nitrogen source
66645	18050 ChEBI	L-glutamine	-	nitrogen source
66645	17203 ChEBI	L-proline	-	nitrogen source
66645	62345 ChEBI	L-rhamnose	+	carbon source
66645	17115 ChEBI	L-serine	+	nitrogen source
66645	16857 ChEBI	L-threonine	+	nitrogen source
66645	17895 ChEBI	L-tyrosine	+	nitrogen source
66645	17716 ChEBI	lactose	-	carbon source
66645	17306 ChEBI	maltose	+	carbon source
66645		milk	-	assimilation
66645	17268 ChEBI	myo-inositol	-	carbon source
66645	17632 ChEBI	nitrate	-	reduction
66645	16634 ChEBI	raffinose	-	carbon source
66645	28017 ChEBI	starch	+	hydrolysis
66645	17992 ChEBI	sucrose	-	carbon source
66645	53424 ChEBI	tween 20	-	hydrolysis
66645	53423 ChEBI	tween 40	+	hydrolysis
66645	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66645	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
66645	catalase	-	1.11.1.6
66645	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Latitude	Longitude	Host species
65045	rhizosphere soil of a rubber tree	Mount Xianglu, Harbin city, Heilongjiang province (44° 4' N, 125° 42' E)	China	CHN	Asia						44.0667	125.7 44.0667/125.7
66645	rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg)	Xianglu Mountain in Heilongjiang Province	China	CHN	Asia	humic acid-vitamin agar	supplemented with cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1)	21 days	28	The rhizosphere soil sample was air-dried at room temperature 28°C for 14 days. After drying, 5 g of the soil sample was mixed with 45 ml distilled water and shaken on a rotary shaker at 180 r.p.m. and 28°C for 30 min. A 200 µl sample of the suspension was then spread on humic acid-vitamin agar for 21 days at 28°C.
67770	Rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg) from Xianglu Mountain in Heilongjiang Province		China	CHN	Asia								Hevea brasiliensis

Taxonmaps

69479

Global distribution of 16S sequence MF981162 (>99% sequence identity) for Sphaerisporangium dianthi from Microbeatlas

Aquatic Samples	1
Soil Samples	10
Animal Samples	0
Plant Samples	12
Total Samples	23

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266515v1 assembly for Sphaerisporangium rhizosphaerae CGMCC 4.7429	scaffold	GCA_042665155	2269375	30.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66645	Sphaerisporangium rhizosphaerae strain NEAU-mq3 16S ribosomal RNA gene, partial sequence	MF981162	1511		2269375

GC content

@ref	GC-content (mol%)	Method
66645	74.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266515v1 assembly for Sphaerisporangium rhizosphaerae CGMCC 4.7429
NCBI: GCA_042665155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.53	no
125439	gram_stain	BacteriaNetⓘ	positive	97.98	no
125439	spore_formation	BacteriaNetⓘ	yes	56.11	no
125439	motility	BacteriaNetⓘ	no	88.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg).	Mu S, Zhao Q, Zhao J, Cao T, Zhao X, Guo X, Li Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002912	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65045	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106198
#66645	Shan Mu, Qiannan Zhao, Junwei Zhao, Tingting Cao, Xueli Zhao, Xiaowei Guo, Yuanyuan Li, Wensheng Xiang, Xiangjing Wang: Sphaerisporangium rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg). IJSEM 68: 2860 - 2865 2018 ( DOI 10.1099/ijsem.0.002912 , PubMed 30010529 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphaerisporangium rhizosphaerae (DSM 106198, CGMCC 4.7429, JCM 32389)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042665155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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