Name: Streptomyces capitiformicae 1H-SSA4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158362

Type strain:

Species: Streptomyces capitiformicae

Strain Designation: 1H-SSA4

Culture col. no.: DSM 104537, CGMCC 4.7403

Strain history: <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; 1H-SSA4 <- <-J. Zhao

NCBI tax ID(s): 2014920 (species)

SI-ID 400584

DSM 104537

Special Collections

Section

Streptomyces capitiformicae 1H-SSA4 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from head of ant Camponotus japonicus Mayr.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces capitiformicae**
	Full Scientific Name (LPSN)	Streptomyces capitiformicae Jiang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65521]	Gram stain	positive

[Ref.: #65521]	Motility	no

[Ref.: #65521]	Multicellular complex forming ability	yes
[Ref.: #65521]	Multicellular complex name	substrate mycelium

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Medium recipe at MediaDive

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Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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ISP 3

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ISP 6

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium

Bennett's agar

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ISP 1

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ISP 5

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Culture medium

Czapek's agar

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ISP 4

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ISP 7

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65038]			growth	28 °C
[Ref.: #65521]			growth	15-38 °C

	pH	Kind of pH		pH
[Ref.: #65521]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #65521]	Spore description	smooth cylindrical spores on spiral chains
[Ref.: #65521]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65521]		NaCl		growth	0-5	%(w/v)

[Ref.: #65521]	Observation	oleaginous
[Ref.: #65521]	Observation	production of angucyclinone antibiotics 8-O-methyltetrangulol, 8-O-methyltetrangomycin and fugianmycin B

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65521]	cellulose ChEBI	-	hydrolysis
[Ref.: #65521]	creatine ChEBI	+	nitrogen source
[Ref.: #65521]	D-fructose ChEBI	-	carbon source
[Ref.: #65521]	D-galactose ChEBI	-	carbon source
[Ref.: #65521]	D-glucose ChEBI	+	carbon source
[Ref.: #65521]	D-mannitol ChEBI	+	carbon source
[Ref.: #65521]	D-ribose ChEBI	-	carbon source
[Ref.: #65521]	D-sorbitol ChEBI	+	carbon source
[Ref.: #65521]	D-xylose ChEBI	-	carbon source
[Ref.: #65521]	esculin ChEBI	+	hydrolysis
[Ref.: #65521]	gelatin ChEBI	+	hydrolysis
[Ref.: #65521]	glycine ChEBI	+	nitrogen source
[Ref.: #65521]	L-alanine ChEBI	+	nitrogen source
[Ref.: #65521]	L-arabinose ChEBI	-	carbon source
[Ref.: #65521]	L-arginine ChEBI	+	nitrogen source
[Ref.: #65521]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #65521]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #65521]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #65521]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #65521]	L-proline ChEBI	+	nitrogen source
[Ref.: #65521]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65521]	L-serine ChEBI	-	nitrogen source
[Ref.: #65521]	L-threonine ChEBI	+	nitrogen source
[Ref.: #65521]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #65521]	lactose ChEBI	+	carbon source
[Ref.: #65521]	maltose ChEBI	+	carbon source
[Ref.: #65521]	milk	+	hydrolysis
[Ref.: #65521]	myo-inositol ChEBI	+	carbon source
[Ref.: #65521]	nitrate ChEBI	-	reduction
[Ref.: #65521]	raffinose ChEBI	+	carbon source
[Ref.: #65521]	starch ChEBI	+	hydrolysis
[Ref.: #65521]	sucrose ChEBI	+	carbon source
[Ref.: #65521]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65521]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65521]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65521]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #65521]		catalase	+	1.11.1.6
[Ref.: #65521]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65038]	Sample type/isolated from	head of ant Camponotus japonicus Mayr
[Ref.: #65038]	Geographic location (country and/or sea, region)	Heilongjiang province, Harbin, Northeast Agriculture University (45° 44' 8'' N, 126° 43' 30'' E)
[Ref.: #65038]	Country	China
[Ref.: #65038]	Country ISO 3 Code	CHN
[Ref.: #65038]	Continent	Asia
[Ref.: #65038]	Geographic location	45.7356°/126.7250°

[Ref.: #65521]	Sample type/isolated from	head of ant (Camponotus japonicus)
[Ref.: #65521]	Geographic location (country and/or sea, region)	Northeast Agriculture University, Harbin, Heilongjiang
[Ref.: #65521]	Country	China
[Ref.: #65521]	Country ISO 3 Code	CHN
[Ref.: #65521]	Continent	Asia
[Ref.: #65521]	Enrichment culture	sodium succinate-asparagine agar
[Ref.: #65521]	Enrichment culture composition	asparagines 0.2 g/l; sodium succinate 1 g/l; CaCl2 . 2H2O 0.2 g/l; FeSO4 . 7H2O 1 mg/l; KCl 0.3 g/l; KH2PO4 0.9 g/l; K2HPO4 . 3H2O 0.6 g/l; agar 20 g/l; pH 7.2 supplemented with cycloheximide (50 mg/l) and nalidixic acid (20 mg/l).
[Ref.: #65521]	Enrichment culture duration	21 days
[Ref.: #65521]	Enrichment culture temperature	28 ̊C
[Ref.: #65521]	Isolation/enrichment procedure	aerobic incubation
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Head
#Host	#Arthropoda	#Insecta

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65038]	Streptomyces capitiformicae strain 1H-SSA4 16S ribosomal RNA gene, partial sequence	KX777629	1520	GenBank ENA	2014920 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces capitiformicae 1H-SSA4	GCA_002214185	chromosome	GenBank ENA	2014920 tax ID	*
[Ref.: #66792]	Streptomyces capitiformicae CGMCC 4.7403	GCA_014653855	scaffold	GenBank ENA	2014920 tax ID	*
[Ref.: #66792]	Streptomyces capitiformicae strain CGMCC 4.7403	2014920.5	wgs	PATRIC	2014920 tax ID	*
[Ref.: #66792]	Streptomyces capitiformicae 1H-SSA4	2873196663	complete	JGI IMG/M	2014920 tax ID	*

[Ref.: #65038]	GC-content	70.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #65521]	GC-content	70 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces capitiformicae 1H-SSA4 NCBI: GCA_002214185.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

Availability in culture collections External links

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Culture collection no.

DSM 104537, CGMCC 4.7403

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SI-ID 400584

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.	Liu P, Xia Z, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004430	2020	*
Phylogeny	Streptomyces tailanensis sp. nov., an actinomycete isolated from riverside silt.	Sun B, Xia Z, Yuan L, Wan C, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004105	2020	*
Phylogeny	Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.	Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002468	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65038

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104537

#65521

Shanwen Jiang, Chenyu Piao, Yang Yu, Peng Cao, Chenxu Li, Fan Yang, Mutong Li, Wensheng Xiang and Chongxi Liu: Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr. IJSEM 68: 118 - 124 2018 ( DOI 10.1099/ijsem.0.002468 , PubMed 29111972 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400584.1 )

* These data were automatically processed and therefore are not curated

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