Name: Butyricicoccus porcorum BB10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158361

Type strain:

Species: Butyricicoccus porcorum

Strain Designation: BB10

Culture col. no.: DSM 104997, ATCC TSD-102

Strain history: <- H. Allen; USDA-ARS, Ames, USA; BB10 <- S. Humphrey {2012}

NCBI tax ID(s): 1945634 (species)

SI-ID 405282

DSM 104997

Special Collections

Section

Butyricicoccus porcorum BB10 is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from distal ileum of a pig.

coccus-shaped
Gram-positive
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Butyricicoccus*
	Species	**Butyricicoccus porcorum**
	Full Scientific Name (LPSN)	Butyricicoccus porcorum Trachsel et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65574]	Gram stain	positive

[Ref.: #65574]	Cell shape	coccus-shaped

[Ref.: #65574]	Motility	no

[Ref.: #65574]	Colony size	2 mm
[Ref.: #65574]	Colony color	white to off white
[Ref.: #65574]	Incubation period	2 days
[Ref.: #65574]	Cultivation medium used	YCFAG

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65037]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #65037]

Culture medium growth

[Ref.: #65037]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65037]

Culture medium composition

expand / minimize

[Ref.: #65574]

Culture medium

rumen-fluid mdeium

[Ref.: #65574]

Culture medium growth

[Ref.: #65574]

Culture medium composition

expand / minimize

[Ref.: #65574]

Culture medium

YCFAG

[Ref.: #65574]

Culture medium growth

		Temperature
[Ref.: #65037]	growth	37 °C
[Ref.: #65574]	growth	30-45 °C
[Ref.: #65574]	optimum	39 °C

	pH	Kind of pH		pH
[Ref.: #65574]			optimum	6.0
[Ref.: #65574]			growth	4-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65574]

Oxygen tolerance

obligate anaerobe

[Ref.: #65574]

Ability of spore formation

[Ref.: #65574]

Observation

mucoid mat in stationary phase liquid culture

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65574]	acetate ChEBI	+	growth
[Ref.: #65574]	arabinose ChEBI	-	builds acid from
[Ref.: #65574]	cellobiose ChEBI	-	builds acid from
[Ref.: #65574]	esculin ChEBI	-	hydrolysis
[Ref.: #65574]	glucose ChEBI	+	fermentation
[Ref.: #65574]	lactose ChEBI	+	fermentation
[Ref.: #65574]	maltose ChEBI	+	fermentation
[Ref.: #65574]	mannitol ChEBI	-	builds acid from
[Ref.: #65574]	mannose ChEBI	-	builds acid from
[Ref.: #65574]	melezitose ChEBI	-	builds acid from
[Ref.: #65574]	rhamnose ChEBI	-	builds acid from
[Ref.: #65574]	salicin ChEBI	-	builds acid from
[Ref.: #65574]	sucrose ChEBI	+	fermentation
[Ref.: #65574]	trehalose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65574]	butyrate ChEBI	yes
[Ref.: #65574]	carbon dioxide ChEBI	yes
[Ref.: #65574]	dihydrogen ChEBI	yes
[Ref.: #65574]	indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #65574]		catalase	-	1.11.1.6
[Ref.: #65574]		urease	+	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	CO2 fixation in Crenarchaeota	100	9 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	oxidative phosphorylation	49.45	45 of 91
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	citric acid cycle	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	lipid metabolism	38.71	12 of 31
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65037]	Sample type/isolated from	distal ileum of a pig
[Ref.: #65037]	Geographic location (country and/or sea, region)	Iowa, Ames
[Ref.: #65037]	Country	USA
[Ref.: #65037]	Country ISO 3 Code	USA
[Ref.: #65037]	Continent	North America
[Ref.: #65037]	Geographic location	42.0308°/-93.6319°

[Ref.: #65574]	Sample type/isolated from	distal ileum of a 3-month old pig
[Ref.: #65574]	Geographic location (country and/or sea, region)	Ames, Iowa
[Ref.: #65574]	Country	USA
[Ref.: #65574]	Country ISO 3 Code	USA
[Ref.: #65574]	Continent	North America
[Ref.: #65574]	Enrichment culture	rumen-fluid medium
[Ref.: #65574]	Enrichment culture composition	5 g tryptone peptone; 2.5 g yeast extract; 1 ml resazurin (0.1 % w/v); 40 ml salt solution 1 (per litre: 6 g K2HPO4 ); 40 ml salt solution 2 (per litre: 6 g KH2PO4 ; 12 g (NH4)2SO4 ; 12 g NaCl; 1.2 g MgSO4 . 7H2O; 1.2 g CaCl . 6H2O); 1 ml haemin solution (0.5 g haemin into 10 ml 1M NaOH. Bring up to 100 ml in dH2O. Stored at 4 °C); 1 ml vitamin K working stock (0.02 ml vitamin K into 2 ml 95 % ethanol. Stored in dark at 4 °C); 0.5 g cysteine HCl; 10 g glucose; 300 ml clarified rumen fluid; dH2O
[Ref.: #65574]	Enrichment culture duration	2 days
[Ref.: #65574]	Enrichment culture temperature	39 ̊C
[Ref.: #65574]	Isolation/enrichment procedure	Coy anaerobic chamber ( 86 % N2, 10 % CO2, 4 % H2)
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Gastrointestinal tract	#Small intestine
#Host	#Mammals	#Suidae (Pig,Swine)
#Host	#Juvenile	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF469066 (>99% sequence identity) for Butyricicoccus porcorum subclade from Microbeatlas

Aquatic Samples	113
Soil Samples	147
Animal Samples	8816
Plant Samples	154
Total Samples	9230

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65037]	Butyricicoccus porcorum strain BB10 16S ribosomal RNA gene, partial sequence	MF469066	1455	GenBank ENA	1945634 tax ID
[Ref.: #65574]	Butyricicoccus porcorum strain BB10 16S ribosomal RNA gene, partial sequence	MF469066.1		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Butyricicoccus porcorum BB10	GCA_002157465	contig	GenBank ENA	1945634 tax ID	*
[Ref.: #66792]	Butyricicoccus sp. BB10 strain BB10	1945634.3	wgs	PATRIC	1945634 tax ID	*
[Ref.: #66792]	Butyricicoccus porcorum BB10	2882308280	draft	JGI IMG/M	1945634 tax ID	*

[Ref.: #65037]	GC-content	55 mol%	sequence analysis
[Ref.: #65574]	GC-content	55 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Butyricicoccus sp. BB10 strain BB10 PATRIC: 1945634.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.557	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	88.893	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	61.573	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.469	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.555	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79.201	no

Availability in culture collections External links

[Ref.: #65037]

Culture collection no.

DSM 104997, ATCC TSD-102

[Ref.: #111166]

SI-ID 405282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract.	Trachsel J, Humphrey S, Allen HK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002738	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65037

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104997

#65574

Julian Trachsel, Samuel Humphrey and Heather K. Allen: Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract. IJSEM 68: 1737 - 1742 2018 ( DOI 10.1099/ijsem.0.002738 , PubMed 29620502 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111166

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405282.1 )

* These data were automatically processed and therefore are not curated

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Butyricicoccus sp. BB10 strain BB10

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