Butyricicoccus porcorum (DSM 104997, ATCC TSD-102, BB10)

Name: Butyricicoccus porcorum (DSM 104997, ATCC TSD-102, BB10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158361

Type strain

Strain Designation BB10

Culture col. no. DSM 104997 ATCC TSD-102 BB10

NCBI tax ID(s) 1945634

Special Collections DSMZ Literature strains Pig DSMZ

Links

Butyricicoccus porcorum BB10 is an obligate anaerobe, mesophilic, Gram-positive prokaryote that was isolated from distal ileum of a pig.

Gram-positive coccus-shaped obligate anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405282

ATCC TSD-102,DSM 104997

@ref 20215

Last LPSN update 2025-12-16 10:08:00

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Butyricicoccus

Species Butyricicoccus porcorum

Full scientific name Butyricicoccus porcorum Trachsel et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
65574	positive	coccus-shaped

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
65574	2 mm	white to off white	2 days	YCFAG

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65037	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)	Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Trypticase peptone 5.0 g/l D-Glucose 5.0 g/l Meat peptone 5.0 g/l Na-acetate 4.5 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
65574	rumen-fluid mdeium		supplemented with acetic acid
65574	YCFAG

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65037	positive	growth	37	mesophilic
65574	positive	growth	30-45
65574	positive	optimum	39	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65574	positive	optimum	6.0
65574	positive	growth	4-8	acidophile

Physiology and metabolism

Oxygen tolerance

65574

Oxygen toleranceobligate anaerobe

Spore formation

65574

Spore formationno

Observation

65574

Observationmucoid mat in stationary phase liquid culture

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65574	30089 ChEBI	acetate	+	growth
65574	22599 ChEBI	arabinose	-	builds acid from
65574	17057 ChEBI	cellobiose	-	builds acid from
65574	4853 ChEBI	esculin	-	hydrolysis
65574	17234 ChEBI	glucose	+	fermentation
65574	17716 ChEBI	lactose	+	fermentation
65574	17306 ChEBI	maltose	+	fermentation
65574	29864 ChEBI	mannitol	-	builds acid from
65574	37684 ChEBI	mannose	-	builds acid from
65574	6731 ChEBI	melezitose	-	builds acid from
65574	26546 ChEBI	rhamnose	-	builds acid from
65574	17814 ChEBI	salicin	-	builds acid from
65574	17992 ChEBI	sucrose	+	fermentation
65574	27082 ChEBI	trehalose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
65574	17968 ChEBI	butyrate
65574	16526 ChEBI	carbon dioxide
65574	18276 ChEBI	dihydrogen
65574	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65574	catalase	-	1.11.1.6
65574	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	aspartate and asparagine metabolism	100	9 of 9
66794	gluconeogenesis	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	vitamin B1 metabolism	92.31	12 of 13
66794	chorismate metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	vitamin B12 metabolism	82.35	28 of 34
66794	threonine metabolism	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	flavin biosynthesis	73.33	11 of 15
66794	purine metabolism	72.34	68 of 94
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	phenylalanine metabolism	69.23	9 of 13
66794	urea cycle	69.23	9 of 13
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	arginine metabolism	62.5	15 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	leucine metabolism	61.54	8 of 13
66794	glycogen metabolism	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	glycine betaine biosynthesis	60	3 of 5
66794	alanine metabolism	58.62	17 of 29
66794	polyamine pathway	56.52	13 of 23
66794	tryptophan metabolism	55.26	21 of 38
66794	proline metabolism	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	non-pathway related	52.63	20 of 38
66794	kanosamine biosynthesis II	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	CMP-KDO biosynthesis	50	2 of 4
66794	biotin biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	cysteine metabolism	50	9 of 18
66794	sulfopterin metabolism	50	2 of 4
66794	lysine metabolism	50	21 of 42
66794	quinate degradation	50	1 of 2
66794	oxidative phosphorylation	49.45	45 of 91
66794	sulfate reduction	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	vitamin B6 metabolism	45.45	5 of 11
66794	pentose phosphate pathway	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	citric acid cycle	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	propionate fermentation	40	4 of 10
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	lipid metabolism	38.71	12 of 31
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	degradation of sugar alcohols	37.5	6 of 16
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	degradation of pentoses	35.71	10 of 28
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	glycine metabolism	30	3 of 10
66794	phenol degradation	30	6 of 20
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	nitrate assimilation	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Gastrointestinal tract	#Small intestine
#Host	#Mammals	#Suidae (Pig,Swine)
#Host	#Juvenile	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Latitude	Longitude
65037	distal ileum of a pig	Iowa, Ames	USA	USA	North America						42.0308	-93.6319 42.0308/-93.6319
65574	distal ileum of a 3-month old pig	Ames, Iowa	USA	USA	North America	rumen-fluid medium	5 g tryptone peptone; 2.5 g yeast extract; 1 ml resazurin (0.1 % w/v); 40 ml salt solution 1 (per litre: 6 g K2HPO4 ); 40 ml salt solution 2 (per litre: 6 g KH2PO4 ; 12 g (NH4)2SO4 ; 12 g NaCl; 1.2 g MgSO4 . 7H2O; 1.2 g CaCl . 6H2O); 1 ml haemin solution (0.5 g haemin into 10 ml 1M NaOH. Bring up to 100 ml in dH2O. Stored at 4 °C); 1 ml vitamin K working stock (0.02 ml vitamin K into 2 ml 95 % ethanol. Stored in dark at 4 °C); 0.5 g cysteine HCl; 10 g glucose; 300 ml clarified rumen fluid; dH2O	2 days	39	Coy anaerobic chamber ( 86 % N2, 10 % CO2, 4 % H2)

Taxonmaps

69479

Global distribution of 16S sequence MF469066 (>99% sequence identity) for Butyricicoccus porcorum subclade from Microbeatlas

Aquatic Samples	113
Soil Samples	147
Animal Samples	8816
Plant Samples	154
Total Samples	9230

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM215746v1 assembly for Butyricicoccus porcorum BB10	contig	GCA_002157465	1945634.3	2882308280	1945634	66.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65574	Butyricicoccus porcorum strain BB10 16S ribosomal RNA gene, partial sequence	MF469066.1
65037	Butyricicoccus porcorum strain BB10 16S ribosomal RNA gene, partial sequence	MF469066	1455		1945634

GC content

@ref	GC-content (mol%)	Method
65037	55	sequence analysis
65574	55	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Butyricicoccus porcorum BB10
NCBI: GCA_002157465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.70	no
125439	motility	BacteriaNetⓘ	yes	86.60	no
125439	gram_stain	BacteriaNetⓘ	variable	87.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	80.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Butyricicoccus sp. BB10 strain BB10
PATRIC: 1945634.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.56	no
125438	anaerobic	anaerobicⓘ	yes	88.89	yes
125438	spore-forming	spore-formingⓘ	no	61.57	yes
125438	aerobic	aerobicⓘ	no	95.47	yes
125438	thermophilic	thermophileⓘ	no	85.56	yes
125438	flagellated	motile2+ⓘ	no	79.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract.	Trachsel J, Humphrey S, Allen HK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002738	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65037	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104997
#65574	Julian Trachsel, Samuel Humphrey and Heather K. Allen: Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract. IJSEM 68: 1737 - 1742 2018 ( DOI 10.1099/ijsem.0.002738 , PubMed 29620502 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Butyricicoccus porcorum (DSM 104997, ATCC TSD-102, BB10)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002157465

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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