Strain identifier

BacDive ID: 158362

Type strain: Yes

Species: Streptomyces capitiformicae

Strain Designation: 1H-SSA4

Strain history: <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; 1H-SSA4 <- <-J. Zhao

NCBI tax ID(s): 2014920 (species)

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General

@ref: 65038

BacDive-ID: 158362

DSM-Number: 104537

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Streptomyces capitiformicae 1H-SSA4 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from head of ant Camponotus japonicus Mayr.

NCBI tax id

  • NCBI tax id: 2014920
  • Matching level: species

strain history

  • @ref: 65038
  • history: <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; 1H-SSA4 <- <-J. Zhao

doi: 10.13145/bacdive158362.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces capitiformicae
  • full scientific name: Streptomyces capitiformicae Jiang et al. 2018

@ref: 65038

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces capitiformicae

full scientific name: Streptomyces capitiformicae Jiang et al. 2018

strain designation: 1H-SSA4

type strain: yes

Morphology

cell morphology

  • @ref: 65521
  • gram stain: positive
  • motility: no

multicellular morphology

  • @ref: 65521
  • forms multicellular complex: yes
  • complex name: substrate mycelium

multimedia

  • @ref: 65038
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104537.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65038GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
65038STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
65038OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)yeshttps://mediadive.dsmz.de/medium/248Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
65521ISP 2yes
65521ISP 3yes
65521ISP 6yes
65521Trypticase Soy Agar (TSA)yes
65521Bennett's agaryes
65521ISP 1yes
65521ISP 5yes
65521Czapek's agaryes
65521ISP 4no
65521ISP 7no

culture temp

@refgrowthtypetemperature
65038positivegrowth28
65521positivegrowth15-38

culture pH

  • @ref: 65521
  • ability: positive
  • type: growth
  • pH: 6.0-9.0
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 65521
  • oxygen tolerance: aerobe

spore formation

@refspore descriptionspore formationconfidence
65521smooth cylindrical spores on spiral chainsyes
69481yes100

halophily

  • @ref: 65521
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %(w/v)

observation

@refobservation
65521oleaginous
65521production of angucyclinone antibiotics 8-O-methyltetrangulol, 8-O-methyltetrangomycin and fugianmycin B

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6552162968cellulose-hydrolysis
6552116919creatine+nitrogen source
6552115824D-fructose-carbon source
6552112936D-galactose-carbon source
6552117634D-glucose+carbon source
6552116899D-mannitol+carbon source
6552116988D-ribose-carbon source
6552117924D-sorbitol+carbon source
6552165327D-xylose-carbon source
655214853esculin+hydrolysis
655215291gelatin+hydrolysis
6552115428glycine+nitrogen source
6552116977L-alanine+nitrogen source
6552130849L-arabinose-carbon source
6552116467L-arginine+nitrogen source
6552117196L-asparagine-nitrogen source
6552129991L-aspartate+nitrogen source
6552129985L-glutamate+nitrogen source
6552118050L-glutamine+nitrogen source
6552117203L-proline+nitrogen source
6552162345L-rhamnose-carbon source
6552117115L-serine-nitrogen source
6552116857L-threonine+nitrogen source
6552117895L-tyrosine+nitrogen source
6552117716lactose+carbon source
6552117306maltose+carbon source
65521milk+hydrolysis
6552117268myo-inositol+carbon source
6552117632nitrate-reduction
6552116634raffinose+carbon source
6552128017starch+hydrolysis
6552117992sucrose+carbon source
6552153424tween 20-hydrolysis
6552153423tween 40+hydrolysis
6552153426tween 80+hydrolysis

metabolite production

  • @ref: 65521
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
65521catalase+1.11.1.6
65521urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation procedure
65038head of ant Camponotus japonicus MayrHeilongjiang province, Harbin, Northeast Agriculture University (45° 44' 8'' N, 126° 43' 30'' E)ChinaCHNAsia45.7356126.725
65521head of ant (Camponotus japonicus)Northeast Agriculture University, Harbin, HeilongjiangChinaCHNAsiasodium succinate-asparagine agarasparagines 0.2 g/l; sodium succinate 1 g/l; CaCl2 . 2H2O 0.2 g/l; FeSO4 . 7H2O 1 mg/l; KCl 0.3 g/l; KH2PO4 0.9 g/l; K2HPO4 . 3H2O 0.6 g/l; agar 20 g/l; pH 7.2 supplemented with cycloheximide (50 mg/l) and nalidixic acid (20 mg/l).21 days28aerobic incubation

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Head
#Host#Arthropoda#Insecta

Safety information

risk assessment

  • @ref: 65038
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65038
  • description: Streptomyces capitiformicae strain 1H-SSA4 16S ribosomal RNA gene, partial sequence
  • accession: KX777629
  • length: 1520
  • database: nuccore
  • NCBI tax ID: 2014920

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces capitiformicae 1H-SSA4GCA_002214185chromosomencbi2014920
66792Streptomyces capitiformicae CGMCC 4.7403GCA_014653855scaffoldncbi2014920
66792Streptomyces capitiformicae strain CGMCC 4.74032014920.5wgspatric2014920
66792Streptomyces capitiformicae 1H-SSA42873196663completeimg2014920

GC content

@refGC-contentmethod
6503870.0high performance liquid chromatography (HPLC)
6552170genome sequence analysis

Genome-based predictions

predictions

  • @ref: 69481
  • trait: spore-forming
  • model: spore-forming
  • description: Ability to form endo- or exospores
  • prediction: yes
  • confidence: 100
  • training_data: no

External links

@ref: 65038

culture collection no.: DSM 104537, CGMCC 4.7403

straininfo link

  • @ref: 111167
  • straininfo: 400584

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29111972Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu CInt J Syst Evol Microbiol10.1099/ijsem.0.0024682017Animals, Anthraquinones/*metabolism, Anti-Bacterial Agents/biosynthesis, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purificationTranscriptome
Phylogeny32195647Streptomyces tailanensis sp. nov., an actinomycete isolated from riverside silt.Sun B, Xia Z, Yuan L, Wan C, Zhang LInt J Syst Evol Microbiol10.1099/ijsem.0.0041052020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny32941129Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.Liu P, Xia Z, Zhang LInt J Syst Evol Microbiol10.1099/ijsem.0.0044302020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65038Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104537Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104537)
65521Shanwen Jiang, Chenyu Piao, Yang Yu, Peng Cao, Chenxu Li, Fan Yang, Mutong Li, Wensheng Xiang and Chongxi LiuStreptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr10.1099/ijsem.0.002468IJSEM 68: 118-124 201829111972
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111167Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400584.1