Name: Palleronia pontilimi GH1-23
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158326

Type strain:

Species: Palleronia pontilimi

Strain Designation: GH1-23

Culture col. no.: DSM 104950, KCTC 52957

Strain history: <- Soon Dong Lee, Jeju National Univ.

NCBI tax ID(s): 1964209 (species)

SI-ID 404267

DSM 104950

Special Collections

DSMZ
KCTC

Section

Palleronia pontilimi GH1-23 is an aerobe, Gram-negative bacterium that was isolated from tidal mudflat.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Palleronia*
	Species	**Palleronia pontilimi**
	Full Scientific Name (LPSN)	Palleronia pontilimi (Lee 2018) Barnier et al. 2022

	Synonym	Tranquillimonas pontilimi
	Synonym	Maribius pontilimi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.486

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65002]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #65002]

Culture medium growth

[Ref.: #65002]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65002]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65002]			growth	30 °C
[Ref.: #67771]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65002]	Sample type/isolated from	tidal mudflat
[Ref.: #65002]	Geographic location (country and/or sea, region)	Ganghwa Island, Dongmak beach (37° 35' 33.8'' N, 126° 27' 29.6'' E)
[Ref.: #65002]	Country	Republic of Korea
[Ref.: #65002]	Country ISO 3 Code	KOR
[Ref.: #65002]	Continent	Asia
[Ref.: #65002]	Geographic location	37.5927°/126.4580°

[Ref.: #67771]	Sample type/isolated from	From a tidal mudflat
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gangwha island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65002]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65002]	Maribius sp. GH1-23 partial 16S rRNA gene, strain GH1-23	LT797154	1357	GenBank ENA	1964209 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Palleronia pontilimi KCTC 52957	GCA_016412875	contig	GenBank ENA	1964209 tax ID	*
[Ref.: #66792]	Maribius pontilimi strain KCTC 52957	1964209.3	wgs	PATRIC	1964209 tax ID	*

[Ref.: #65002]

GC-content

66.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maribius pontilimi strain KCTC 52957 PATRIC: 1964209.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maribius pontilimi strain KCTC 52957 PATRIC: 1964209.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.486	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.634	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.288	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.571	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.198	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	53.379	no

Availability in culture collections External links

[Ref.: #65002]

Culture collection no.

DSM 104950, KCTC 52957

[Ref.: #111136]

SI-ID 404267

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Palleronia sediminis sp. nov. and Flavivirga algicola sp. nov., two marine bacteria isolated from offshore areas near Weihai.	Sun XK, Zhang YN, Jia YY, Zhong YL, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004949	2021	*
Phylogeny	Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia.	Barnier C, Clerissi C, Lami R, Intertaglia L, Lebaron P, Grimaud R, Urios L	Syst Appl Microbiol	10.1016/j.syapm.2019.126018	2019	*
Phylogeny	Maribius pontilimi sp. nov., isolated from a tidal mudflat.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijsem.0.002512	2017	*
Phylogeny	Mesobaculum littorinae gen. nov., sp. nov., a novel bacterium isolated from a sea snail Littorina scabra.	Li F, Huang Y, Hu W, Li Z, Wang Q, Huang S, Yu L, Liu S, Sun C, Pan X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004821	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65002

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104950

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111136

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404267.1 )

* These data were automatically processed and therefore are not curated

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Maribius pontilimi strain KCTC 52957

Maribius pontilimi strain KCTC 52957

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