Name: Dulcicalothrix desertica DSM 106972
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158327

Type strain:

Species: Dulcicalothrix desertica

Culture col. no.: DSM 106972, PCC 7102, SAG 35.79, ATCC 27901

Strain history: <- SAG; SAG 35.79 <- H. G. Schwabe

NCBI tax ID(s): 232991 (strain), 32056 (species)

Section

Dulcicalothrix desertica DSM 106972 is a psychrophilic, Gram-negative bacterium that was isolated from soil, fine desert sand.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Cyanobacteriota*
	Class	*Cyanophyceae*
	Order	*Nostocales*
	Family	*Calotrichaceae*
	Genus	*Dulcicalothrix*
	Species	**Dulcicalothrix desertica**
	Full Scientific Name (LPSN)	Dulcicalothrix desertica (Schwabe 1960) Saraf et al. 2019

Synonym

Calothrix desertica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.807

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65003]

Culture medium

CYANOBACTERIA MEDIUM ES (DSMZ Medium 1693)

[Ref.: #65003]

Culture medium growth

[Ref.: #65003]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65003]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65003]			growth	18 °C

[Ref.: #65003]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %98.806
[Ref.: #69481]	Ability of spore formation	no Confidence in %94

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65003]	Sample type/isolated from	soil, fine desert sand
[Ref.: #65003]	Geographic location (country and/or sea, region)	La Pertada, Antofagasta Desert
[Ref.: #65003]	Country	Chile
[Ref.: #65003]	Country ISO 3 Code	CHL
[Ref.: #65003]	Continent	Middle and South America
[Ref.: #65003]	Geographic location	-23.6806°/-70.7929°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM019960 (>99% sequence identity) for Calothrix desertica subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	7
Animal Samples	41
Plant Samples	3
Total Samples	113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65003]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65003]	Calothrix desertica PCC 7102 strain SAG 35.79 16S ribosomal RNA gene, partial sequence	KM019960	1458	ENA	232991 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dulcicalothrix desertica PCC 7102	GCA_007830875	scaffold	GenBank	232991 tax ID	*
[Ref.: #66792]	Dulcicalothrix desertica PCC 7102	GCA_003991905	scaffold	GenBank	232991 tax ID	*
[Ref.: #66792]	Calothrix desertica PCC 7102	232991.3	wgs	PATRIC	232991 tax ID	*
[Ref.: #66792]	Calothrix desertica PCC 7102	232991.5	wgs	PATRIC	232991 tax ID	*
[Ref.: #66792]	Calothrix desertica PCC 7102	2509887024	draft	JGI IMG/M	232991 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Calothrix desertica PCC 7102 PCC 7102 NCBI: GCA_007830875.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Calothrix desertica PCC 7102 PCC 7102 NCBI: GCA_007830875.1
[Ref.: #69480]	motile	no	77.333	no
[Ref.: #69480]	flagellated	no	91.487	no
[Ref.: #69480]	gram-positive	no	91.48	no
[Ref.: #69480]	anaerobic	no	88.017	no
[Ref.: #69480]	aerobic	yes	52.466	no
[Ref.: #69480]	halophile	no	90.201	no
[Ref.: #69480]	spore-forming	no	71.538	no
[Ref.: #69480]	thermophile	no	99.046	no
[Ref.: #69480]	glucose-util	yes	72.225	no
[Ref.: #69480]	glucose-ferment	no	86.381	no

Availability in culture collections External links

[Ref.: #65003]

Culture collection no.

DSM 106972, PCC 7102, SAG 35.79, ATCC 27901

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65003

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106972

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Calothrix desertica PCC 7102 PCC 7102

Calothrix desertica PCC 7102 PCC 7102

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