Gottfriedia solisilvae (DSM 100485, CGMCC 1.14993, NEAU-cbsb5)

Name: Gottfriedia solisilvae (DSM 100485, CGMCC 1.14993, NEAU-cbsb5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158259

Type strain

Strain Designation NEAU-cbsb5

Culture col. no. DSM 100485 CGMCC 1.14993 NEAU-cbsb5

NCBI tax ID(s) 1516104

Special Collections DSMZ Literature strains

History DSMZ <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-cbsb5

Links

Gottfriedia solisilvae NEAU-cbsb5 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and builds singly or occasionally in pairs.

spore-forming Gram-positive motile rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397790

DSM 100485

@ref 20215

Last LPSN update 2026-05-29 08:43:55

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Gottfriedia

Species Gottfriedia solisilvae

Full scientific name Gottfriedia solisilvae (Pan et al. 2017) Gupta et al. 2020

Synonyms (1)

Bacillus solisilvae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
65400	positive	1.8-2.1 µm	0.5-0.7 µm	rod-shaped
65400						peritrichous

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65400	2.5-3.3 mm	cream	circular	2 days	nutrient agar

Multicellular morphology

@ref	Forms multicellular complex	Complex name
65400		singly or occasionally in pairs

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64918	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
65400	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
64918	positive	growth	30
65400	positive	growth	15-40
65400	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
65400	positive	optimum	7.0
65400	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65400	facultative anaerobe
125439	obligate aerobe	98.043

Spore formation

@ref	Spore description	Type of spore	Confidence
65400
65400	oval and sub-terminal and occur in slightly swollen sporangia after 2 days of incubation at 30C on NA containing MnSO4 (5mg/l 1)	endospore
125438			92.803

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65400	NaCl	positive	growth	4.0 %(w/v)

Observation

@ref	Observation
65400	moist and loosely butyrous
65400	major menaquinones are MK-7 and MK-6
65400	cell-wall peptidoglycan contains meso-DAP as the diagnostic diamino acid

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65400	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
65400	27613 ChEBI	amygdalin	-	builds acid from
65400	18305 ChEBI	arbutin	+	builds acid from
65400	17057 ChEBI	cellobiose	+	builds acid from
65400	16919 ChEBI	creatine	-	carbon source
65400	17108 ChEBI	D-arabinose	-	builds acid from
65400	18333 ChEBI	D-arabitol	-	builds acid from
65400	15824 ChEBI	D-fructose	-	carbon source
65400	15824 ChEBI	D-fructose	+	builds acid from
65400	28847 ChEBI	D-fucose	-	builds acid from
65400	12936 ChEBI	D-galactose	-	carbon source
65400	12936 ChEBI	D-galactose	-	builds acid from
65400	17634 ChEBI	D-glucose	-	carbon source
65400	17634 ChEBI	D-glucose	+	builds acid from
65400	62318 ChEBI	D-lyxose	-	builds acid from
65400	16899 ChEBI	D-mannitol	+	builds acid from
65400	16899 ChEBI	D-mannitol	+	carbon source
65400	16024 ChEBI	D-mannose	-	builds acid from
65400	16988 ChEBI	D-ribose	-	builds acid from
65400	16988 ChEBI	D-ribose	-	carbon source
65400	17924 ChEBI	D-sorbitol	-	builds acid from
65400	17924 ChEBI	D-sorbitol	+	carbon source
65400	16443 ChEBI	D-tagatose	-	builds acid from
65400	65327 ChEBI	D-xylose	+	carbon source
65400	65327 ChEBI	D-xylose	-	builds acid from
65400	17113 ChEBI	erythritol	-	builds acid from
65400	4853 ChEBI	esculin	+	builds acid from
65400		esculin ferric citrate	+	hydrolysis
65400	16813 ChEBI	galactitol	-	builds acid from
65400	28066 ChEBI	gentiobiose	-	builds acid from
65400	24265 ChEBI	gluconate	-	builds acid from
65400	17754 ChEBI	glycerol	-	builds acid from
65400	15428 ChEBI	glycine	+	carbon source
65400	28087 ChEBI	glycogen	+	builds acid from
65400	15443 ChEBI	inulin	-	builds acid from
65400	16087 ChEBI	isocitrate	-	assimilation
65400	16977 ChEBI	L-alanine	-	carbon source
65400	30849 ChEBI	L-arabinose	-	builds acid from
65400	30849 ChEBI	L-arabinose	-	carbon source
65400	18403 ChEBI	L-arabitol	-	builds acid from
65400	16467 ChEBI	L-arginine	-	carbon source
65400	17196 ChEBI	L-asparagine	-	carbon source
65400	29991 ChEBI	L-aspartate	+	carbon source
65400	18287 ChEBI	L-fucose	-	builds acid from
65400	29985 ChEBI	L-glutamate	+	carbon source
65400	18050 ChEBI	L-glutamine	-	carbon source
65400	17203 ChEBI	L-proline	+	carbon source
65400	62345 ChEBI	L-rhamnose	-	builds acid from
65400	62345 ChEBI	L-rhamnose	+	carbon source
65400	17115 ChEBI	L-serine	-	carbon source
65400	17266 ChEBI	L-sorbose	-	builds acid from
65400	16857 ChEBI	L-threonine	-	carbon source
65400	17895 ChEBI	L-tyrosine	+	carbon source
65400	65328 ChEBI	L-xylose	-	builds acid from
65400	17716 ChEBI	lactose	-	builds acid from
65400	17716 ChEBI	lactose	-	carbon source
65400	25115 ChEBI	malate	+	carbon source
65400	17306 ChEBI	maltose	-	carbon source
65400	17306 ChEBI	maltose	+	builds acid from
65400	37684 ChEBI	mannose	-	carbon source
65400	6731 ChEBI	melezitose	-	builds acid from
65400	28053 ChEBI	melibiose	-	builds acid from
65400	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65400	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65400	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65400	17268 ChEBI	myo-inositol	-	builds acid from
65400	17268 ChEBI	myo-inositol	-	carbon source
65400	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65400	17632 ChEBI	nitrate	-	reduction
65400	30623 ChEBI	oxalate	+	carbon source
65400		potassium 2-dehydro-D-gluconate	-	builds acid from
65400	15361 ChEBI	pyruvate	-	carbon source
65400	16634 ChEBI	raffinose	-	builds acid from
65400	16634 ChEBI	raffinose	+	carbon source
65400	15963 ChEBI	ribitol	-	builds acid from
65400	17814 ChEBI	salicin	+	builds acid from
65400	28017 ChEBI	starch	+	builds acid from
65400	28017 ChEBI	starch	+	hydrolysis
65400	17992 ChEBI	sucrose	-	builds acid from
65400	17992 ChEBI	sucrose	+	carbon source
65400	27082 ChEBI	trehalose	+	builds acid from
65400	32528 ChEBI	turanose	-	builds acid from
65400	53424 ChEBI	tween 20	+	hydrolysis
65400	53423 ChEBI	tween 40	+	hydrolysis
65400	53426 ChEBI	tween 80	+	hydrolysis
65400	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
65400		casein
65400	62968 ChEBI	cellulose
65400	5291 ChEBI	gelatin
65400	35581 ChEBI	indole
65400	15138 ChEBI	sulfide

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
65400	15688 ChEBI	acetoin	-
65400	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
65400	arginine dihydrolase	-	3.5.3.6
65400	catalase	+	1.11.1.6
65400	lysine decarboxylase	-	4.1.1.18
65400	ornithine decarboxylase	-	4.1.1.17
65400	tryptophan deaminase	-	4.1.99.1
65400	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
64918	forest soil	Heilongjiang Province (42° 06' N 128° 04' E), Changbai Mountain at an altitude of 1500 m)	China	CHN	Asia	42.1	128.067 42.1/128.067
65400	forest soil	Changbai Mountain, Heilongjiang Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ733017 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	505
Soil Samples	3503
Animal Samples	669
Plant Samples	391
Total Samples	5068

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64918	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM212840v1 assembly for Gottfriedia solisilvae NEAU-cbsb5	contig	GCA_002128405	1516104.3	2791355484	1516104	73.11
66792	ASM1464049v1 assembly for Gottfriedia solisilvae CGMCC 1.14993	scaffold	GCA_014640495	1516104.166	8113114651	1516104	72.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64918	Gottfriedia solisilvae strain NEAU-cbsb5 16S ribosomal RNA gene, partial sequence	KJ733017	1543		1516104
124043	Bacillus solisilvae strain CGMCC 1.14993 16S ribosomal RNA gene, partial sequence.	MT759868	1367		1516104

GC content

@ref	GC-content (mol%)	Method
64918	33.0	sequence analysis
65400	33	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM212840v1 assembly for Gottfriedia solisilvae NEAU-cbsb5
BV-BRC: 1516104.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.04	no
125439	gram_stain	BacteriaNetⓘ	positive	62.68	no
125439	motility	BacteriaNetⓘ	yes	66.53	no
125439	spore_formation	BacteriaNetⓘ	yes	75.75	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gottfriedia solisilvae CGMCC 1.14993
NCBI: GCA_014640495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.97	yes
125438	anaerobic	anaerobicⓘ	no	97.19	yes
125438	aerobic	aerobicⓘ	yes	54.58	yes
125438	spore-forming	spore-formingⓘ	yes	92.80	no
125438	thermophilic	thermophileⓘ	no	89.35	yes
125438	flagellated	motile2+ⓘ	yes	84.86	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus solisilvae sp. nov., isolated from forest soil.	Pan T, He H, Wang X, Shen Y, Zhao J, Yan K, Wang X, Liu C, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002312	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64918	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100485
#65400	Tong Pan, Hairong He, Xiaochong Wang, Yibo Shen, Junwei Zhao, Kai Yan, Xiangjing Wang, Chongxi Liu, Ji Zhang, Wensheng Xiang: Bacillus solisilvae sp. nov., isolated from forest soil. IJSEM 67: 4449 - 4455 2017 ( DOI 10.1099/ijsem.0.002312 , PubMed 28920837 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gottfriedia solisilvae (DSM 100485, CGMCC 1.14993, NEAU-cbsb5)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002128405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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