Name: Sinobacterium norvegicum 3CM4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158201

Type strain:

Species: Sinobacterium norvegicum

Strain Designation: 3CM4

Culture col. no.: DSM 108824, CAIM 1884, CECT 8267

Strain history: <- CECT; CECT 8267 <- J. L. Romalde, University of Santiago de Compostela, Spain <- A. L. Diéguez, University of Santiago de Compostela, Spain; 3CM4

NCBI tax ID(s): 1641715 (species)

SI-ID 402736

DSM 108824

Section

Sinobacterium norvegicum 3CM4 is a psychrophilic bacterium that was isolated from Great scallop broodstock.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Spongiibacteraceae*
	Genus	*Sinobacterium*
	Species	**Sinobacterium norvegicum**
	Full Scientific Name (LPSN)	Sinobacterium norvegicum Diéguez et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64800]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64800]

Culture medium growth

[Ref.: #64800]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64800]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64800]			growth	15 °C

[Ref.: #64800]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64800]	Sample type/isolated from	Great scallop (Pecten maximus<\i>) broodstock
[Ref.: #64800]	Geographic location (country and/or sea, region)	hatchery near Bergen, Øygarden (60° 30' 53.77'' N, 4° 54' 14.75'' W)
[Ref.: #64800]	Country	Norway
[Ref.: #64800]	Country ISO 3 Code	NOR
[Ref.: #64800]	Continent	Europe
[Ref.: #64800]	Geographic location	60.5149°/4.9041°
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Animal habitation (Nest,Burrow)
#Host	#Invertebrates (Other)	#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG004165 (>99% sequence identity) for Sinobacterium norvegicum subclade from Microbeatlas

Aquatic Samples	383
Soil Samples	2
Animal Samples	15
Plant Samples
Total Samples	400

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64800]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64800]	Sinobacterium norvegicum partial 16S rRNA gene, strain type strain: CM4	HG004165	1377	ENA	1641715 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sinobacterium norvegicum CECT 8267, type strain	GCA_923077115	contig	GenBank	1641715 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sinobacterium norvegicum CECT 8267, type strain NCBI: GCA_923077115.1
[Ref.: #69480]	aerobic	yes	80.864	no
[Ref.: #69480]	flagellated	no	64.113	no
[Ref.: #69480]	gram-positive	no	98.425	no
[Ref.: #69480]	anaerobic	no	99.625	no
[Ref.: #69480]	halophile	yes	81.534	no
[Ref.: #69480]	spore-forming	no	96.967	no
[Ref.: #69480]	thermophile	no	99.559	yes
[Ref.: #69480]	glucose-util	yes	65.292	no
[Ref.: #69480]	motile	no	82.265	no
[Ref.: #69480]	glucose-ferment	no	79.526	no

Availability in culture collections External links

[Ref.: #64800]

Culture collection no.

DSM 108824, CAIM 1884, CECT 8267

[Ref.: #111030]

SI-ID 402736

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sinobacterium norvegicum sp. nov., isolated from great scallop (Pecten maximus) broodstock and emended description of Sinobacterium caligoides.	Dieguez AL, Jacobsen A, Magnesen T, Romalde JL	Antonie Van Leeuwenhoek	10.1007/s10482-015-0551-y	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64800

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108824

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111030

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402736.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sinobacterium norvegicum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Sinobacterium norvegicum CECT 8267, type strain

Change proposal

Change proposal